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LnCeVar 2.0
New Version
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LnCeVar's New Feature
- New collection of 812 scRNA-seq & stRNA-seq samples (>2,000,000 single cells / spatial spots).
- New curation of >20,000 gene biomarkers and SNV-ceRNA events supported by experiments.
- New analysis tools: 5 comprehensive analysis tools and 12 mini analysis tools.
- Newly developed multi-level data cross-talk and 3D visualisation interface.
- Novel inference of SNV effects on cell type, states and functions at single-cell / spatial level.
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Comprehensive Analysis Tools

ComTool1

LnCeVar - CeVarCluster

Cluster Analysis

Investigate the patterns of gene expression and SNV mutations in SNV-ceRNA events, and examine the distribution of cell clusters/types.

812
Samples
Cluster CeVar
Feature
ComTool2

LnCeVar - CeVarTraject

Traject Analysis

Investigate the patterns of gene expression and SNV mutations in SNV-ceRNA events, and examine the dynamics of cell trajectories.

812
Samples
Traject CeVar
Feature
ComTool3

LnCeVar - CeVarCellState

Cell State Analysis

Investigate how SNV-ceRNA events affect cell states along developmental trajectories to reveal the dynamic interactions that drive cell fate decisions.

14 Types
Cell States
Cell State
Feature
ComTool4

LnCeVar - CeVarSC3D

SC-Omics 3D Visualization

Conduct multi-level crosstalk analysis of SNVs, ceRNA networks and cell states contributing to individual disease pathology at the single-cell level, presented in an interactive 3D view.

357
SC Samples
Omics data
Feature
ComTool5

LnCeVar - CeVarST3D

ST-Omics 3D Visualization

Conduct multi-level crosstalk analysis of SNVs, ceRNA networks and cell states contributing to individual disease pathology at the spatial level, presented in an interactive 3D view.

455
ST Samples
Omics data
Feature

Mini Analysis Tools

CellCluster
CellCluster
CellCluster
CellTraject
CellCluster
CellExp
CellCluster
CeSNV
CellCluster
CellState
CellCluster
CeState
CellCluster
Hallmark
CellCluster
Function
CellCluster
CeSNVNet
CellCluster
Survival
CellCluster
CellSpatialView
CellCluster
CeSNVSpatialView
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New Features

243

Datasets

812

Samples

1.77M+

Cells

0.90M+

Spatial Spots

102

Diseases

5.21M+

CeRNA-SNV Events

16,937

Biomarkers

LnCeVar 2.0 | Our works

2025

LnCeCell 2.0

257 Datasets 1,002,988 Cells 367,971 Spatial spots

An updated resource for lncRNA-associated ceRNA networks and web tools based on single-cell and spatial transcriptomics sequencing data.

2024

CellTracer

222 Datasets 1.94M+ Cells 42 Diseases

A comprehensive database to dissect the causative multilevel interplay contributing to cell development trajectories.

2023

CellMarker 2.0

108 Datasets 26K+ Cell markers 656 tissues

An updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data.

2022

LncACTdb 3.0

62 Datasets 5,669 CeRNAs 10K Biomarkers

An updated database of experimentally supported ceRNA interactions and personalized networks contributing to precision medicine.

2021

Lnc2Cancer 3.0

9,254 LncRNA-cancer events 1,049 CircRNA-cancer events

An updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data.

2021

LincSNP 3.0

1.48M+ SNP 4.31M+ LD SNP

An updated database for linking functional variants to human long non-coding RNAs, circular RNAs and their regulatory elements.

LnCeVar 2.0 | Update
Data Type V1.0 V2.0 Fold Growth Comparison
© 2025. College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China. image