Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

2p23.3

lncRNA

GTF3C2-AS1 ( ENSG00000234945)

miRNA

hsa-miR-760 (MIMAT0004957)

mRNA

CSNK2A1 (ENSG00000101266)

Disease

OV

FDR

5.52E-6

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
miRNA  3'    AGGGGUGUCUGGGUCUCGGC 5' hsa-miR-760
                  |||||  ||||||| 
target 5' GGGAACGGACAGAGUCAGAGCCA GTF3C2-AS1
Start: 327  End: 334
Site type: 8mer-1a
Context++ Score: -0.408
miRNA  3'    AGGGGUGUCUGGGUCUCGGC 5' hsa-miR-760
                  |||||  ||||||| 
target 5' GGGAACGGACAGAGUCAGAGCCA GTF3C2-AS1
Start: 415  End: 422
Site type: 8mer-1a
Context++ Score: -0.413
miRNA  3'    AGGGGUGUCUGGGUCUCGGC 5' hsa-miR-760
                  |||||  ||||||| 
target 5' GGGAACGGACAGAGUCAGAGCCA GTF3C2-AS1
Start: 373  End: 380
Site type: 8mer-1a
Context++ Score: -0.404
RNAbybrid target site prediction
miRNA  3 A     G  U            5 hsa-miR-760
           GGGGU UC GGGUCUCGGC    
           UCCCA GG CCCAGAGCUG    
target 5 G     A  C          G 3 GTF3C2-AS1
Start: 187  End: 207
Energy: -35.1 kcal/mol
Align Score: 0.001261
miRNA  3      G          G        C 5 hsa-miR-760
           AGGG      UGUCU GGUCUCGG    
           UCCC      GCAGG CCAGAGCC    
target 5 U    GUCUGA              A 3 GTF3C2-AS1
Start: 113  End: 133
Energy: -33.5 kcal/mol
Align Score: 0.004171
miRNA  3 A     G  U            5 hsa-miR-760
           GGGGU UC GGGUCUCGGC    
           UCCCA GG CCCAGAGCUG    
target 5 G     A  C          G 3 GTF3C2-AS1
Start: 313  End: 333
Energy: -35.1 kcal/mol
Align Score: 0.001723
miRNA  3 A     G  U            5 hsa-miR-760
           GGGGU UC GGGUCUCGGC    
           UCCCA GG CCCAGAGCUG    
target 5 G     A  C          G 3 GTF3C2-AS1
Start: 272  End: 292
Energy: -35.1 kcal/mol
Align Score: 0.001634
miRNA  3 A                   G        C 5 hsa-miR-760
           GGGG          UGUCU GGUCUCGG    
           CCCU          ACAGA UCAGAGCC    
target 5 G    GUGGGAACGG     G        A 3 GTF3C2-AS1
Start: 305  End: 325
Energy: -33.2 kcal/mol
Align Score: 0.003388

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for GTF3C2-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-760

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CSNK2A1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 2p23.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.