Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

5q31.2

lncRNA

SNHG4 ( ENSG00000281398)

miRNA

hsa-miR-939-5p (MIMAT0004982)

mRNA

SLC34A2 (ENSG00000157765)

Disease

OV

FDR

1.67E-6

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 GU     UCU        A    U 5 hsa-miR-939-5p
            GGGGG   CGGAGUCG GGGG    
            UCUCC   GCCUCGGC CUCC    
target 5  U     U               U 3 SNHG4
Start: 312  End: 332
Energy: -34 kcal/mol
Align Score: 0.002397
miRNA  3 G     G         C      GU 5 hsa-miR-939-5p
           UGGGG UCUCGGAGU  GAGGG     
           ACUCC AGAGCCUCG  CUCCC     
target 5 G     G         AU     A  3 SNHG4
Start: 77  End: 97
Energy: -39.2 kcal/mol
Align Score: 0.00037
miRNA  3 GU     UCU                 5 hsa-miR-939-5p
            GGGGG   CGGAGUC GAGGGGU    
            UCUCC   GCCUCAG CUCCCCA    
target 5  U     U         C       G 3 SNHG4
Start: 748  End: 768
Energy: -40.6 kcal/mol
Align Score: 0.000365
miRNA  3 G     G         C      GU 5 hsa-miR-939-5p
           UGGGG UCUCGGAGU  GAGGG     
           ACUCC AGAGCCUCG  CUCCC     
target 5 G     G         AU     A  3 SNHG4
Start: 80  End: 100
Energy: -39.2 kcal/mol
Align Score: 0.000246
miRNA  3 GU     UCU                 5 hsa-miR-939-5p
            GGGGG   CGGAGUC GAGGGGU    
            UCUCC   GCCUCAG CUCCCCA    
target 5  U     U         C       G 3 SNHG4
Start: 557  End: 577
Energy: -40.6 kcal/mol
Align Score: 0.000409

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SNHG4

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-939-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SLC34A2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 5q31.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.