Basic Info

Starting a new search ...

Basic Information for the CNV-ceRNA event

Cytoband

1p31.1

lncRNA

ZRANB2-AS2 ( ENSG00000229956)

miRNA

hsa-miR-1254 (MIMAT0005905)

mRNA

CCAR1 (ENSG00000060339)

Disease

PRAD

FDR

2.02E-5

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
miRNA  3' UGACGUCCGAGGUCGAAGGUCCGA 5' hsa-miR-1254
                          ||||||| 
target 5'  AAUGCAAUUAUUGAUUCCAGGCA ZRANB2-AS2
Start: 304  End: 311
Site type: 8mer-1a
Context++ Score: -0.432
RNAbybrid target site prediction
miRNA  3              G                              5 hsa-miR-1254
           UGACGUC  CGA  GUCG             AAGGUC CGA    
           GCUGCAG  GCU  CAGU             UUCCGG GCU    
target 5 A       AU   GG    UUGUGUUAGAAGG      G   A 3 ZRANB2-AS2
Start: 172  End: 192
Energy: -30.9 kcal/mol
Align Score: 0.005216
miRNA  3        CC     C            5 hsa-miR-1254
           UGACGU  GAGGU GAAGGUCCGA    
           GCUGCA  CUCUG CUUCCAGGUU    
target 5 C      AU     C          C 3 ZRANB2-AS2
Start: 154  End: 174
Energy: -35.1 kcal/mol
Align Score: 0.002451
miRNA  3        CC     C            5 hsa-miR-1254
           UGACGU  GAGGU GAAGGUCCGA    
           GCUGCA  CUCUG CUUCCAGGUU    
target 5 C      AU     C          C 3 ZRANB2-AS2
Start: 154  End: 174
Energy: -35.1 kcal/mol
Align Score: 0.001898
miRNA  3        CC     C            5 hsa-miR-1254
           UGACGU  GAGGU GAAGGUCCGA    
           GCUGCA  CUCUG CUUCCAGGUU    
target 5 C      AU     C          C 3 ZRANB2-AS2
Start: 154  End: 174
Energy: -35.1 kcal/mol
Align Score: 0.002137
miRNA  3           AGG          GA 5 hsa-miR-1254
           UGACGUCCG   UCGAAGGUCC     
           ACUGUGGGU   AGCUUCUAGG     
target 5 G         AG           G  3 ZRANB2-AS2
Start: 797  End: 817
Energy: -34.3 kcal/mol
Align Score: 0.004661

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for ZRANB2-AS2

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1254

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CCAR1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 1p31.1

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.