Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

19q13.12

lncRNA

LINC00665 ( ENSG00000232677)

miRNA

hsa-miR-1254 (MIMAT0005905)

mRNA

CCAR1 (ENSG00000060339)

Disease

SARC

FDR

8.99E-4

Reported as biomarkers
0

Circulating
0

Drug resistent
1

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3                       GA         G    GA 5 hsa-miR-1254
           UGACG             UCC    GGUCGAA GUCC     
           GCUGU             AGG    CCAGCUU UAGG     
target 5 C     GUGCUCCCCCGGA   ACAG       G    G  3 LINC00665
Start: 23  End: 43
Energy: -31.5 kcal/mol
Align Score: 0.007659
miRNA  3 U           G           GA 5 hsa-miR-1254
           GACGUCC GAG UCG AAGGUCC     
           CUGCAGG CUC GGC UUCUGGG     
target 5 C       U   A   C       A  3 LINC00665
Start: 615  End: 635
Energy: -34.6 kcal/mol
Align Score: 0.002769
miRNA  3            G        A     CGA 5 hsa-miR-1254
           UGACGUCCGA     GUCG AGGUC      
           ACUGCAGGCU     UGGU UUCAG      
target 5 U          AUGGA    A     A   3 LINC00665
Start: 382  End: 402
Energy: -31.6 kcal/mol
Align Score: 0.007944
miRNA  3        CC       AA      A 5 hsa-miR-1254
           UGACGU  GAGGUCG  GGUCCG    
           ACUGCA  CUCCAGC  CUGGGC    
target 5 C                       G 3 LINC00665
Start: 1597  End: 1617
Energy: -34.5 kcal/mol
Align Score: 0.008284
miRNA  3        CC       AA      A 5 hsa-miR-1254
           UGACGU  GAGGUCG  GGUCCG    
           ACUGCA  CUCCAGC  CUGGGC    
target 5 C                       G 3 LINC00665
Start: 1746  End: 1766
Energy: -34.5 kcal/mol
Align Score: 0.008866

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LINC00665

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1254

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CCAR1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 19q13.12

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.