Basic Info

Starting a new search ...

Basic Information for the CNV-ceRNA event

Cytoband

12q24.31

lncRNA

LINC01089 ( ENSG00000212694)

miRNA

hsa-miR-331-3p (MIMAT0000760)

mRNA

FHIT (ENSG00000189283)

Disease

SARC

FDR

2.44E-13

Reported as biomarkers
0

Circulating
0

Drug resistent
2

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 A         A                5 hsa-miR-331-3p
           AGAUC  CU UCCGGGUC  CCCG    
           UCUGG  GG GGGCCCAG  GGGC    
target 5 G     CA  C        CC    A 3 LINC01089
Start: 33  End: 53
Energy: -34.1 kcal/mol
Align Score: 0.001613
miRNA  3 AA       U                            5 hsa-miR-331-3p
            GAUCCUA              CCGG  GUCCCCG    
            CUGGGGU              GGCC  CAGGGGU    
target 5  G       UCUGCCAGCCUCCU    AG       G 3 LINC01089
Start: 652  End: 672
Energy: -32 kcal/mol
Align Score: 0.009459
miRNA  3 AA       U                            5 hsa-miR-331-3p
            GAUCCUA              CCGG  GUCCCCG    
            CUGGGGU              GGCC  CAGGGGU    
target 5  G       UCUGCCAGCCUCCU    AG       G 3 LINC01089
Start: 756  End: 776
Energy: -32 kcal/mol
Align Score: 0.007882
miRNA  3     A        A      U        5 hsa-miR-331-3p
           AAG     UCCU UCCGGG CCC CG    
           UUC     GGGG GGGCCC GGG GC    
target 5 C   GGCGG    A      U   U  C 3 LINC01089
Start: 622  End: 642
Energy: -32.9 kcal/mol
Align Score: 0.006688
miRNA  3     A        A      U        5 hsa-miR-331-3p
           AAG     UCCU UCCGGG CCC CG    
           UUC     GGGG GGGCCC GGG GC    
target 5 C   GGCGG    A      U   U  C 3 LINC01089
Start: 1102  End: 1122
Energy: -32.9 kcal/mol
Align Score: 0.008761

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LINC01089

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-331-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for FHIT

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 12q24.31

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.