Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

1p36.33

lncRNA

RP4-758J18.2 ( ENSG00000224870)

miRNA

hsa-miR-339-5p (MIMAT0000764)

mRNA

NOVA1 (ENSG00000139910)

Disease

SARC

FDR

4.76E-8

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 GC      G              GU      5 hsa-miR-339-5p
            ACUCGA    GAC   CUCCU  CCCU    
            UGAGCU    CUG   GAGGA  GGGA    
target 5  C      GUGA   CCA     GU    G 3 RP4-758J18.2
Start: 441  End: 461
Energy: -33.5 kcal/mol
Align Score: 0.004496
miRNA  3 GC                               5 hsa-miR-339-5p
            ACUCGA      GGACCUCCUG  UCCCU    
            UGGGCU      UCUGGGGGAC  AGGGA    
target 5  C      GCUGAA          AU     A 3 RP4-758J18.2
Start: 1334  End: 1354
Energy: -37 kcal/mol
Align Score: 0.00341
miRNA  3 G     GA                     5 hsa-miR-339-5p
           CACUC    GGAC C UCCUGUCCCU    
           GUGGG    CCUG G GGGGCAGGGA    
target 5 G     GAAG    C U          A 3 RP4-758J18.2
Start: 289  End: 309
Energy: -36.2 kcal/mol
Align Score: 0.001099
miRNA  3 G     GA                     5 hsa-miR-339-5p
           CACUC    GGAC C UCCUGUCCCU    
           GUGGG    CCUG G GGGGCAGGGA    
target 5 G     GAAG    C U          A 3 RP4-758J18.2
Start: 283  End: 303
Energy: -36.2 kcal/mol
Align Score: 0.000913
miRNA  3 GC                               5 hsa-miR-339-5p
            ACUCGA      GGACCUCCUG  UCCCU    
            UGGGCU      UCUGGGGGAC  AGGGA    
target 5  C      GCUGAA          AU     A 3 RP4-758J18.2
Start: 1470  End: 1490
Energy: -37 kcal/mol
Align Score: 0.00363

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for RP4-758J18.2

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-339-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for NOVA1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 1p36.33

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.