Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

17p11.2

lncRNA

CCDC144NL-AS1 ( ENSG00000233098)

miRNA

hsa-miR-671-5p (MIMAT0003880)

mRNA

CDR1 (ENSG00000184258)

Disease

SARC

FDR

7.63E-3

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 GA  U                 A     A 5 hsa-miR-671-5p
            GG CGGGGAGG    UCCCG   AGG    
            CC GUCCCUCU    GGGGC   UCC    
target 5  G  U        CCAU     CUC   A 3 CCDC144NL-AS1
Start: 440  End: 460
Energy: -35.2 kcal/mol
Align Score: 0.001211
miRNA  3 G   UC                        GGA 5 hsa-miR-671-5p
           AGG  GGGGAGG          UCCCGAA      
           UCC  CCCCUCC          GGGGCUU      
target 5 G   U        CUCCACUCUG       G   3 CCDC144NL-AS1
Start: 266  End: 286
Energy: -33.3 kcal/mol
Align Score: 0.007957
miRNA  3 GA    G  GA          GA 5 hsa-miR-671-5p
            GGUC GG  GGUCCCGAAG     
            CCAG CU  CCAGGGCUUC     
target 5  G    G  G           A  3 CCDC144NL-AS1
Start: 1053  End: 1073
Energy: -35.6 kcal/mol
Align Score: 0.005713
miRNA  3 GA  U                 A     A 5 hsa-miR-671-5p
            GG CGGGGAGG    UCCCG   AGG    
            CC GUCCCUCU    GGGGC   UCC    
target 5  G  U        CCAU     CUC   A 3 CCDC144NL-AS1
Start: 330  End: 350
Energy: -35.2 kcal/mol
Align Score: 0.001359
miRNA  3 G         G      G     A      5 hsa-miR-671-5p
           AG GUCGGG     AG UCCCG AGGA    
           UC CGGCCC     UC GGGGU UCCU    
target 5 G  U      AAACA  G     C    C 3 CCDC144NL-AS1
Start: 1226  End: 1246
Energy: -35.4 kcal/mol
Align Score: 0.00555

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for CCDC144NL-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-671-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CDR1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 17p11.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.