Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

2p13.3

lncRNA

PCBP1-AS1 ( ENSG00000179818)

miRNA

hsa-miR-1254 (MIMAT0005905)

mRNA

CCAR1 (ENSG00000060339)

Disease

SKCM

FDR

1.58E-10

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 UGA                 U                5 hsa-miR-1254
             CG       UCC GAGG    CGAAGGUCCGA    
             GC       AGG CUCU    GCUUCCAGGCU    
target 5   A  CAUUCCA   U    GUGU           G 3 PCBP1-AS1
Start: 242  End: 262
Energy: -34.7 kcal/mol
Align Score: 0.00303
miRNA  3 U        G   U     A             5 hsa-miR-1254
           GAC GUCC AGG    CG    AGGUCCGA    
           UUG CAGG UCU    GU    UCCAGGCU    
target 5 U   A    G   CACU  GUCA        G 3 PCBP1-AS1
Start: 301  End: 321
Energy: -31.6 kcal/mol
Align Score: 0.007711
miRNA  3 UGA GU         A            A 5 hsa-miR-1254
             C  CCGAGGUCG      AGGUCCG    
             G  GGCUCCAGC      UCUGGGC    
target 5   A GU         ACUGAC       C 3 PCBP1-AS1
Start: 256  End: 276
Energy: -37.7 kcal/mol
Align Score: 0.000779
miRNA  3 U                    GU      5 hsa-miR-1254
           GACG   UCCGAGGUCGAAG  CCGA    
           CUGU   GGGCUCCAGUUUU  GGUU    
target 5 U    CCC             GU    C 3 PCBP1-AS1
Start: 138  End: 158
Energy: -38.9 kcal/mol
Align Score: 0.000576
miRNA  3 U                    GU      5 hsa-miR-1254
           GACG   UCCGAGGUCGAAG  CCGA    
           CUGU   GGGCUCCAGUUUU  GGUU    
target 5 U    CCC             GU    C 3 PCBP1-AS1
Start: 336  End: 356
Energy: -38.9 kcal/mol
Align Score: 0.000791

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for PCBP1-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1254

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CCAR1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 2p13.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.