Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

11p15.4

lncRNA

SBF2-AS1 ( ENSG00000246273)

miRNA

hsa-miR-328-5p (MIMAT0026486)

mRNA

CD44 (ENSG00000026508)

Disease

PCPG

FDR

3.12E-18

Reported as biomarkers
0

Circulating
0

Drug resistent
2

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 GG      G             G       5 hsa-miR-328-5p
            GACUCG GGAGGA    CGG  GGGG    
            CUGAGC CCUCCU    GCC  CCCU    
target 5  A      G      GAGA   AG    G 3 SBF2-AS1
Start: 149  End: 169
Energy: -40.2 kcal/mol
Align Score: 0.0003
miRNA  3 GG      G             G       5 hsa-miR-328-5p
            GACUCG GGAGGA    CGG  GGGG    
            CUGAGC CCUCCU    GCC  CCCU    
target 5  A      G      GAGA   AG    G 3 SBF2-AS1
Start: 147  End: 167
Energy: -40.2 kcal/mol
Align Score: 0.000436
miRNA  3    G  U               G  G 5 hsa-miR-328-5p
           GG AC CG GGGAGG ACGGG GG    
           CU UG GC CCCUCU UGCCU CU    
target 5 G  G  U  U      U     G  A 3 SBF2-AS1
Start: 128  End: 148
Energy: -33.5 kcal/mol
Align Score: 0.00339
miRNA  3                    GGAG            5 hsa-miR-328-5p
           GGGACU         CGG    GACGGGGGGG    
           CCCUGA         GUC    CUGCUCCUCU    
target 5 C      CAGUUGAGG   AAG           G 3 SBF2-AS1
Start: 436  End: 456
Energy: -32.2 kcal/mol
Align Score: 0.006882
miRNA  3 G G  U   G                  5 hsa-miR-328-5p
           G AC CGG GAGGA CGGGG G GG    
           C UG GCU CUCUU GCUCC C CC    
target 5 G G      G     C     A U  A 3 SBF2-AS1
Start: 12  End: 32
Energy: -30.4 kcal/mol
Align Score: 0.007749

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SBF2-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-328-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CD44

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 11p15.4

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.