Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

9q34.11

lncRNA

LINC00963 ( ENSG00000204054)

miRNA

hsa-miR-185-3p (MIMAT0004611)

mRNA

STIM1 (ENSG00000167323)

Disease

SKCM

FDR

1.38E-4

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 C                     UU         A 5 hsa-miR-185-3p
           UGGUCU            CCU  CGGUCGGGG    
           GCCAGG            GGA  GCCGGCCCC    
target 5 C      CCGCCGUUUCCC              C 3 LINC00963
Start: 35  End: 55
Energy: -34.2 kcal/mol
Align Score: 0.009049
miRNA  3           U                          A 5 hsa-miR-185-3p
           CUGGUCUCC   UUCGG             UCGGGG    
           GGCCAGAGG   AAGCU             AGCCUC    
target 5 G         CUU     CACAUCUGUCUGG      A 3 LINC00963
Start: 486  End: 506
Energy: -34.6 kcal/mol
Align Score: 0.003597
miRNA  3           U                          A 5 hsa-miR-185-3p
           CUGGUCUCC   UUCGG             UCGGGG    
           GGCCAGAGG   AAGCU             AGCCUC    
target 5 G         CUU     CACAUCUGUCUGG      A 3 LINC00963
Start: 123  End: 143
Energy: -34.6 kcal/mol
Align Score: 0.00336
miRNA  3 CU           U  G        A 5 hsa-miR-185-3p
            GGUCU  CCUU CG   UCGGGG    
            CCAGG  GGAG GC   GGCCCC    
target 5  C     CU    U  AGU      G 3 LINC00963
Start: 445  End: 465
Energy: -31.1 kcal/mol
Align Score: 0.008205
miRNA  3      UC           U         A 5 hsa-miR-185-3p
           CUGG  UCCUU  UCGG     CGGGG    
           GACC  GGGAG  AGCU     GCCCU    
target 5 U    UU     GC    UUGCU     G 3 LINC00963
Start: 131  End: 151
Energy: -30.7 kcal/mol
Align Score: 0.006279

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LINC00963

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-185-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for STIM1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 9q34.11

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.