Basic Info

Starting a new search ...

Basic Information for the CNV-ceRNA event

Cytoband

3p22.1

lncRNA

VIPR1-AS1 ( ENSG00000232354)

miRNA

hsa-miR-4649-3p (MIMAT0019712)

mRNA

PTPN6 (ENSG00000111679)

Disease

SKCM

FDR

7.22E-4

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 A         U       G            5 hsa-miR-4649-3p
           CCCCU   C CC GUCC     GAGUCU    
           GGGGA   G GG CAGG     CUCAGA    
target 5 G     AUA U  C    AAGAU      G 3 VIPR1-AS1
Start: 377  End: 397
Energy: -31.7 kcal/mol
Align Score: 0.008706
miRNA  3                    G     CU 5 hsa-miR-4649-3p
           ACCC CU  CUCCGUCCG   AGU     
           UGGG GG  GAGGCAGGU   UCA     
target 5 U    A  CU         GGA   C  3 VIPR1-AS1
Start: 286  End: 306
Energy: -30.8 kcal/mol
Align Score: 0.006927
miRNA  3 A                                     5 hsa-miR-4649-3p
           CCCCUCU           CCG  UCCG  GAGUCU    
           GGGGGGA           GGC  GGGU  CUCAGG    
target 5 C       GUAGGAAAAGU   AU    UA      C 3 VIPR1-AS1
Start: 124  End: 144
Energy: -32.6 kcal/mol
Align Score: 0.005485
miRNA  3                    G     CU 5 hsa-miR-4649-3p
           ACCC CU  CUCCGUCCG   AGU     
           UGGG GG  GAGGCAGGU   UCA     
target 5 U    A  CU         GGA   C  3 VIPR1-AS1
Start: 280  End: 300
Energy: -30.8 kcal/mol
Align Score: 0.006754
miRNA  3 A    UCU   U    A       5 hsa-miR-4649-3p
           CCCC   CCG CCGG  GUCU    
           GGGG   GGC GGCC  CAGA    
target 5 A    U     U    AG    U 3 VIPR1-AS1
Start: 383  End: 403
Energy: -34.1 kcal/mol
Align Score: 0.004213

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for VIPR1-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-4649-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for PTPN6

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 3p22.1

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.