Basic Info

Starting a new search ...

Basic Information for the CNV-ceRNA event

Cytoband

5q14.1

lncRNA

CKMT2-AS1 ( ENSG00000247572)

miRNA

hsa-miR-550a-3p (MIMAT0003257)

mRNA

MAPK1 (ENSG00000100030)

Disease

SKCM

FDR

2.13E-13

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 UAC    A                      5 hsa-miR-550a-3p
             ACGG     CUCCCUCA  UUCUGU    
             UGCC     GAGGGAGU  AGGACA    
target 5   U    GGCAA        UA      U 3 CKMT2-AS1
Start: 157  End: 177
Energy: -32.4 kcal/mol
Align Score: 0.004194
miRNA  3 UAC    A                      5 hsa-miR-550a-3p
             ACGG     CUCCCUCA  UUCUGU    
             UGCC     GAGGGAGU  AGGACA    
target 5   U    GGCAA        UA      U 3 CKMT2-AS1
Start: 169  End: 189
Energy: -32.4 kcal/mol
Align Score: 0.004318
miRNA  3 UAC    A                      5 hsa-miR-550a-3p
             ACGG     CUCCCUCA  UUCUGU    
             UGCC     GAGGGAGU  AGGACA    
target 5   U    GGCAA        UA      U 3 CKMT2-AS1
Start: 195  End: 215
Energy: -32.4 kcal/mol
Align Score: 0.00447
miRNA  3 UACA                     U 5 hsa-miR-550a-3p
              CGGACUC    CCUCAUUCUG    
              GCCUGGG    GGAGUAAGAC    
target 5    A       CUAU          U 3 CKMT2-AS1
Start: 868  End: 888
Energy: -32.9 kcal/mol
Align Score: 0.006207

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for CKMT2-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-550a-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for MAPK1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 5q14.1

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.