Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

16q12.2

lncRNA

CRNDE ( ENSG00000245694)

miRNA

hsa-miR-940 (MIMAT0004983)

mRNA

ZNF24 (ENSG00000172466)

Disease

SKCM

FDR

7.96E-4

Reported as biomarkers
5

Circulating
4

Drug resistent
23

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 CCCC          GG     A 5 hsa-miR-940
              UCGCC CCCG  ACGGA    
              AGUGG GGGC  UGCCU    
target 5    C     A    A      C 3 CRNDE
Start: 307  End: 327
Energy: -29.1 kcal/mol
Align Score: 0.009477
miRNA  3 CC                A     AA 5 hsa-miR-940
            CCU CGCC CC CGGG   CGG     
            GGA GCGG GG GCCC   GCC     
target 5  C   C    C  U    CGC   C  3 CRNDE
Start: 21  End: 41
Energy: -31.9 kcal/mol
Align Score: 0.004934
miRNA  3 C       C         A      AA 5 hsa-miR-940
           CCCUCGC   C CCGGG    CGG     
           GGGAGCG   G GGCCC    GCC     
target 5 A       UCC C     GCGC   C  3 CRNDE
Start: 2  End: 22
Energy: -34.5 kcal/mol
Align Score: 0.001299
miRNA  3 C       C         A      AA 5 hsa-miR-940
           CCCUCGC   C CCGGG    CGG     
           GGGAGCG   G GGCCC    GCC     
target 5 A       UCC C     GCGC   C  3 CRNDE
Start: 76  End: 96
Energy: -34.5 kcal/mol
Align Score: 0.001901
miRNA  3       C                     AA 5 hsa-miR-940
           CCCCU GC CCCCGG       GACGG     
           GGGGA CG GGGGCC       CUGCC     
target 5 C     C  U      GAGGUGG     A  3 CRNDE
Start: 14  End: 34
Energy: -38.2 kcal/mol
Align Score: 0.000634

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for CRNDE

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-940

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for ZNF24

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 16q12.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.