Basic Info

Starting a new search ...

Basic Information for the CNV-ceRNA event

Cytoband

15q21.2

lncRNA

GABPB1-AS1 ( ENSG00000244879)

miRNA

hsa-miR-1247-5p (MIMAT0005899)

mRNA

MAP3K9 (ENSG00000006432)

Disease

STAD

FDR

1.50E-3

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
miRNA  3'     AGGCCCCUGCUUGCCCUGCCCA 5' hsa-miR-1247-5p
                            ||||||| 
target 5'    CAACUAGGCAGACUGGGACGGGA GABPB1-AS1
Start: 788  End: 795
Site type: 8mer-1a
Context++ Score: -0.487
miRNA  3'     AGGCCCCUGCUUGCCCUGCCCA 5' hsa-miR-1247-5p
                            ||||||| 
target 5'    CAACUAGGCAGACUGGGACGGGA GABPB1-AS1
Start: 419  End: 426
Site type: 8mer-1a
Context++ Score: -0.477
miRNA  3'     AGGCCCCUGCUUGCCCUGCCCA 5' hsa-miR-1247-5p
                            ||||||| 
target 5'    CAACUAGGCAGACUGGGACGGGA GABPB1-AS1
Start: 202  End: 209
Site type: 8mer-1a
Context++ Score: -0.507
miRNA  3'     AGGCCCCUGCUUGCCCUGCCCA 5' hsa-miR-1247-5p
                            ||||||| 
target 5'    CAACUAGGCAGACUGGGACGGGA GABPB1-AS1
Start: 194  End: 201
Site type: 8mer-1a
Context++ Score: -0.509
RNAbybrid target site prediction
miRNA  3 AG      GC  G    G         5 hsa-miR-1247-5p
            GCCCCU  UU CCCU    CCCA    
            CGGGGA  GA GGGA    GGGU    
target 5  G      GA  G    AAGA    C 3 GABPB1-AS1
Start: 363  End: 383
Energy: -33.1 kcal/mol
Align Score: 0.00705
miRNA  3 A G    UG              CA 5 hsa-miR-1247-5p
           G CCCC  CUU  GC CCUGCC     
           C GGGG  GGA  UG GGACGG     
target 5 G G    UG   GC  C      C  3 GABPB1-AS1
Start: 141  End: 161
Energy: -33 kcal/mol
Align Score: 0.004412
miRNA  3 A  C    G                 A 5 hsa-miR-1247-5p
           GG CCCU  CUUGC CCUGC   CC    
           CC GGGA  GAACG GGGCG   GG    
target 5 A  A    AG     A     UCU  G 3 GABPB1-AS1
Start: 224  End: 244
Energy: -31.7 kcal/mol
Align Score: 0.005245

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for GABPB1-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1247-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for MAP3K9

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 15q21.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.