Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

6q14.3

lncRNA

SNHG5 ( ENSG00000203875)

miRNA

hsa-miR-1254 (MIMAT0005905)

mRNA

CCAR1 (ENSG00000060339)

Disease

STAD

FDR

2.29E-2

Reported as biomarkers
2

Circulating
1

Drug resistent
6

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3        C    GU                A 5 hsa-miR-1254
           UGACGU CGAG  CGAAGG      UCCG    
           GCUGCA GCUU  GCUUCC      AGGU    
target 5 U                   UCCCUC    A 3 SNHG5
Start: 489  End: 509
Energy: -31.3 kcal/mol
Align Score: 0.009184
miRNA  3        C    GU                A 5 hsa-miR-1254
           UGACGU CGAG  CGAAGG      UCCG    
           GCUGCA GCUU  GCUUCC      AGGU    
target 5 U                   UCCCUC    A 3 SNHG5
Start: 401  End: 421
Energy: -31.3 kcal/mol
Align Score: 0.007014
miRNA  3 U    U          AA     U       A 5 hsa-miR-1254
           GACG CC GAGGUCG     GG     CCG    
           UUGC GG CUCCGGC     CC     GGC    
target 5 C    U  C       AUGUG  UGAGC   G 3 SNHG5
Start: 189  End: 209
Energy: -32.1 kcal/mol
Align Score: 0.006684
miRNA  3 U    U          AA     U       A 5 hsa-miR-1254
           GACG CC GAGGUCG     GG     CCG    
           UUGC GG CUCCGGC     CC     GGC    
target 5 C    U  C       AUGUG  UGAGC   G 3 SNHG5
Start: 57  End: 77
Energy: -32.1 kcal/mol
Align Score: 0.006046
miRNA  3 U    U          AA     U       A 5 hsa-miR-1254
           GACG CC GAGGUCG     GG     CCG    
           UUGC GG CUCCGGC     CC     GGC    
target 5 C    U  C       AUGUG  UGAGC   G 3 SNHG5
Start: 110  End: 130
Energy: -32.1 kcal/mol
Align Score: 0.003296

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SNHG5

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1254

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CCAR1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 6q14.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.