Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

3q29

lncRNA

MELTF-AS1 ( ENSG00000228109)

miRNA

hsa-miR-1292-5p (MIMAT0005943)

mRNA

SOX4 (ENSG00000124766)

Disease

STAD

FDR

2.63E-3

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3     G  GA                       CAA        5 hsa-miR-1292-5p
           GUC CA  CGGCCU             UGGG     GGGU    
           CAG GU  GCUGGG             ACCC     CCCA    
target 5 U      GA      CGUGUCUUCACUG    ACCCG    G 3 MELTF-AS1
Start: 178  End: 198
Energy: -29.9 kcal/mol
Align Score: 0.006982
miRNA  3                            U     A         5 hsa-miR-1292-5p
           GUC   GCAGA         CGGCCU  GGGC   AGGGU    
           CAG   CGUCU         GCCGGG  CCCG   UCCCG    
target 5 C   GUC     GGGAGACCC      CU    CCC     G 3 MELTF-AS1
Start: 161  End: 181
Energy: -34.2 kcal/mol
Align Score: 0.004804
miRNA  3       AGA   G           G  AA      5 hsa-miR-1292-5p
           GUCGC    CG CCU      UG GC  GGGU    
           CGGCG    GC GGA      GC CG  CCCG    
target 5 G     GUUG  G   AGGGCC  G  GG    G 3 MELTF-AS1
Start: 28  End: 48
Energy: -32.3 kcal/mol
Align Score: 0.001198
miRNA  3     G  GA                       CAA        5 hsa-miR-1292-5p
           GUC CA  CGGCCU             UGGG     GGGU    
           CAG GU  GCUGGG             ACCC     CCCA    
target 5 U      GA      CGUGUCUUCACUG    ACCCG    G 3 MELTF-AS1
Start: 126  End: 146
Energy: -29.9 kcal/mol
Align Score: 0.005727
miRNA  3 G    A       CCU     AA      5 hsa-miR-1292-5p
           UCGC   GACGG   UGGGC  GGGU    
           GGCG   CUGUC   ACCUG  CCCG    
target 5 G    GGC     CU      CG    A 3 MELTF-AS1
Start: 135  End: 155
Energy: -32.4 kcal/mol
Align Score: 0.003814

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for MELTF-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1292-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SOX4

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 3q29

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.