Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

17q25.1

lncRNA

SNHG16 ( ENSG00000163597)

miRNA

hsa-miR-1180-3p (MIMAT0005825)

mRNA

TNIP2 (ENSG00000168884)

Disease

READ

FDR

3.23E-4

Reported as biomarkers
2

Circulating
0

Drug resistent
8

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
miRNA  3'     UGUGUGGGUGCGCUCGGCCUUU 5' hsa-miR-1180-3p
                            ||||||| 
target 5'    GCCUCAGUUUCCAAAGCCGGAAA SNHG16
Start: 117  End: 124
Site type: 8mer-1a
Context++ Score: -0.596
miRNA  3'   UGUGUGGGUGCGCUCGGCCUUU 5' hsa-miR-1180-3p
                          ||||||| 
target 5'  AAACUGAACUGCUUUGCCGGAAA SNHG16
Start: 365  End: 372
Site type: 8mer-1a
Context++ Score: -0.593
miRNA  3'     UGUGUGGGUGCGCUCGGCCUUU 5' hsa-miR-1180-3p
                            ||||||| 
target 5'    GCCUCAGUUUCCAAAGCCGGAAA SNHG16
Start: 440  End: 447
Site type: 8mer-1a
Context++ Score: -0.596
miRNA  3'     UGUGUGGGUGCGCUCGGCCUUU 5' hsa-miR-1180-3p
                            ||||||| 
target 5'    GCCUCAGUUUCCAAAGCCGGAAA SNHG16
Start: 113  End: 120
Site type: 8mer-1a
Context++ Score: -0.597
miRNA  3'     UGUGUGGGUGCGCUCGGCCUUU 5' hsa-miR-1180-3p
                            ||||||| 
target 5'    GCCUCAGUUUCCAAAGCCGGAAA SNHG16
Start: 190  End: 197
Site type: 8mer-1a
Context++ Score: -0.579
RNAbybrid target site prediction
miRNA  3'   GU  G       U          5' hsa-miR-1180-3p
           U  GU GGUGCGC CGGCCUUU    
           G  CG CCGCGUG GCUGGAAG    
target 5' A GU  G                A 3' SNHG16
Start: 11  End: 31
Energy: -31.2 kcal/mol
Align Score: 0.006366
miRNA  3'   GU  G       U          5' hsa-miR-1180-3p
           U  GU GGUGCGC CGGCCUUU    
           G  CG CCGCGUG GCUGGAAG    
target 5' A GU  G                A 3' SNHG16
Start: 10  End: 30
Energy: -31.2 kcal/mol
Align Score: 0.00674
miRNA  3'   GU  G       U          5' hsa-miR-1180-3p
           U  GU GGUGCGC CGGCCUUU    
           G  CG CCGCGUG GCUGGAAG    
target 5' A GU  G                A 3' SNHG16
Start: 8  End: 28
Energy: -31.2 kcal/mol
Align Score: 0.006539
miRNA  3   GU  G       U          5 hsa-miR-1180-3p
           U  GU GGUGCGC CGGCCUUU    
           G  CG CCGCGUG GCUGGAAG    
target 5 A GU  G                A 3 SNHG16
Start: 11  End: 31
Energy: -31.2 kcal/mol
Align Score: 0.006366
miRNA  3   GU  G       U          5 hsa-miR-1180-3p
           U  GU GGUGCGC CGGCCUUU    
           G  CG CCGCGUG GCUGGAAG    
target 5 A GU  G                A 3 SNHG16
Start: 10  End: 30
Energy: -31.2 kcal/mol
Align Score: 0.00674

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SNHG16

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1180-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for TNIP2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 17q25.1

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.