Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

14q23.1

lncRNA

PSMA3-AS1 ( ENSG00000257621)

miRNA

hsa-miR-1292-5p (MIMAT0005943)

mRNA

SOX4 (ENSG00000124766)

Disease

READ

FDR

1.36E-9

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3                       A                                     5 hsa-miR-1292-5p
           GUCGCA              G    CGGCCU             UGGGCA  AGGGU    
           CAGUGU              U    GCCGGG             GCCUGU  UCCCA    
target 5 U      GUAUGAAAAUCACU GGUG      CAUGGUGGCUCAC      AA     G 3 PSMA3-AS1
Start: 275  End: 295
Energy: -33.2 kcal/mol
Align Score: 0.005817
miRNA  3                       A                                     5 hsa-miR-1292-5p
           GUCGCA              G    CGGCCU             UGGGCA  AGGGU    
           CAGUGU              U    GCCGGG             GCCUGU  UCCCA    
target 5 U      GUAUGAAAAUCACU GGUG      CAUGGUGGCUCAC      AA     G 3 PSMA3-AS1
Start: 405  End: 425
Energy: -33.2 kcal/mol
Align Score: 0.003874
miRNA  3              A         GGGCA       5 hsa-miR-1292-5p
           GUCG     CAG   CGGCCUU     AGGGU    
           CAGC     GUC   GCCGGAG     UCUCA    
target 5 A    ACCUA   GUG       GAG       G 3 PSMA3-AS1
Start: 86  End: 106
Energy: -29.7 kcal/mol
Align Score: 0.008726
miRNA  3 G     G   G  CU                5 hsa-miR-1292-5p
           UCGCA  AC GC   UGGGCA  AGGGU    
           GGCGU  UG CG   GCCUGU  UCCCA    
target 5 U     GG  G  CAU      AA     G 3 PSMA3-AS1
Start: 300  End: 320
Energy: -32 kcal/mol
Align Score: 0.00552
miRNA  3     GC  A                                  5 hsa-miR-1292-5p
           GUC  AG CGGCCU             UGGGCA  AGGGU    
           CAG  UU GCCGGG             GCCUGU  UUCCA    
target 5 A   AA  A      CGUGGUGGCGCAU      AA     G 3 PSMA3-AS1
Start: 313  End: 333
Energy: -30.5 kcal/mol
Align Score: 0.008631

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for PSMA3-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1292-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SOX4

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 14q23.1

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.