Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

5p15.33

lncRNA

PP7080 ( ENSG00000188242)

miRNA

hsa-miR-939-5p (MIMAT0004982)

mRNA

SLC34A2 (ENSG00000157765)

Disease

STAD

FDR

1.42E-4

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3          U      A                         5 hsa-miR-939-5p
           GUGGGG G CU CGG      GUCG        AGGGGU    
           CGCCCC C GA GCC      CAGC        UCCCCA    
target 5 U      A U  G   ACUCCA    CCAAAUCU      C 3 PP7080
Start: 555  End: 575
Energy: -35.2 kcal/mol
Align Score: 0.00176
miRNA  3                     A    U          5 hsa-miR-939-5p
           GUGGGG     GUC UCGG    G CGAGGGGU    
           CACCUC     CGG AGCC    C GCUCCCUA    
target 5 A      ACUCA   C    CAGG U        C 3 PP7080
Start: 1317  End: 1337
Energy: -35.4 kcal/mol
Align Score: 0.006625
miRNA  3 G      U          A U  AG      5 hsa-miR-939-5p
           UGGGGG      CUCGG G CG  GGGU    
           GCCCCC      GAGCC C GC  CCCG    
target 5 G      CCAACC       C  G     G 3 PP7080
Start: 115  End: 135
Energy: -34.7 kcal/mol
Align Score: 0.003375
miRNA  3 G      U             GA       5 hsa-miR-939-5p
           UGGGGG CUCGGA    GUC  GGGGU    
           ACCCCU GAGCCU    UAG  CCCCG    
target 5 G             GUCC   A      G 3 PP7080
Start: 356  End: 376
Energy: -35.9 kcal/mol
Align Score: 0.001203

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for PP7080

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-939-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SLC34A2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 5p15.33

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.