Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

19q11

lncRNA

CTC-459F4.3 ( ENSG00000267575)

miRNA

hsa-miR-939-5p (MIMAT0004982)

mRNA

SLC34A2 (ENSG00000157765)

Disease

STAD

FDR

1.95E-5

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3                          UC       G   5 hsa-miR-939-5p
           GUGGGGGU         CUCGGAG    GAGGG U    
           CACCUCUA         GAGCCUC    CUCCU G    
target 5 C        GUUCCUACU       UUCC     G A 3 CTC-459F4.3
Start: 202  End: 222
Energy: -34.7 kcal/mol
Align Score: 0.002379
miRNA  3                 U    G                   5 hsa-miR-939-5p
           GUGGGG      GUC CGGA        UCGAGGG GU    
           UACCCC      CAG GCUU        GGCUCCC CA    
target 5 A      AAUUAA   U    AAGUGUGA       U  G 3 CTC-459F4.3
Start: 563  End: 583
Energy: -35.3 kcal/mol
Align Score: 0.00191
miRNA  3 G                      GU GA        5 hsa-miR-939-5p
           UGGGG         GUCUCGGA  C   GGGGU    
           GCCCU         CGGGGCCU  G   CCCCG    
target 5 A     GCUUCAGCA        GU GGG     G 3 CTC-459F4.3
Start: 331  End: 351
Energy: -36.6 kcal/mol
Align Score: 0.002982
miRNA  3    G        G AG            5 hsa-miR-939-5p
           GU GGGGUCUC G  UCGAG GGGU    
           CA CUCUGGAG C  AGCUC CCCA    
target 5 A  G        A AG     U    C 3 CTC-459F4.3
Start: 253  End: 273
Energy: -34.6 kcal/mol
Align Score: 0.003021
miRNA  3       GG        U        U 5 hsa-miR-939-5p
           GUGGG  UCUCGGAG  CGAGGGG    
           CGCCC  GGGGCCUC  GCUUUCC    
target 5 C     AG        CU       U 3 CTC-459F4.3
Start: 181  End: 201
Energy: -39 kcal/mol
Align Score: 0.000254

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for CTC-459F4.3

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-939-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SLC34A2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 19q11

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.