Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

9q34.11

lncRNA

LINC00963 ( ENSG00000204054)

miRNA

hsa-miR-346 (MIMAT0000773)

mRNA

EFEMP2 (ENSG00000172638)

Disease

THCA

FDR

1.07E-5

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
miRNA  3' ucuCCGUC-CGUACGCCCGUCUGu 5' hsa-miR-346
             || ||  |||| |||||||| 
target 5' gttGGAAGCCCATG-GGGCAGACc 3' LINC00963
Start: 369  End: 391
Energy: -23.7 kcal/mol
Align Score: 161
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3'                                    G   GU 5' hsa-miR-346
           UCUCCGUCC               GUACG  CCC UCU     
           GGGGGCAGG               CAUGC  GGG GGA     
target 5' U         AAUGAGGGUCCUCUC     AA   G   A  3' LINC00963
Start: 972  End: 992
Energy: -33.8 kcal/mol
Align Score: 0.007971
miRNA  3'                       G              5' hsa-miR-346
           UCUCCGUCC GU       AC CCCG   UCUGU    
           GGGGGCAGG CG       UG GGGC   GGGCA    
target 5' U         A  ACACCGC  G    CGA     G 3' LINC00963
Start: 259  End: 279
Energy: -36.5 kcal/mol
Align Score: 0.004394
miRNA  3' UCU        A                           5' hsa-miR-346
             CCGUCCGU  CG          CCCG   UCUGU    
             GGCAGGUA  GU          GGGC   GGACA    
target 5'   C        CA  UCCUCCCUCA    CCA     C 3' LINC00963
Start: 17  End: 37
Energy: -29.9 kcal/mol
Align Score: 0.009001
miRNA  3' UCU   UCC    UA          U 5' hsa-miR-346
             CCG      G  CGCCCGUCUG    
             GGC      U  GCGGGCAGGC    
target 5'   U   UUCCUC CG          U 3' LINC00963
Start: 710  End: 730
Energy: -31.3 kcal/mol
Align Score: 0.00975
miRNA  3' UCU   UCC    UA          U 5' hsa-miR-346
             CCG      G  CGCCCGUCUG    
             GGC      U  GCGGGCAGGC    
target 5'   U   UUCCUC CG          U 3' LINC00963
Start: 199  End: 219
Energy: -31.3 kcal/mol
Align Score: 0.009823

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LINC00963

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-346

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for EFEMP2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 9q34.11

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.