Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

7q35

lncRNA

OR2A1-AS1 ( ENSG00000244479)

miRNA

hsa-miR-1296-5p (MIMAT0005794)

mRNA

ERBB2 (ENSG00000141736)

Disease

TGCT

FDR

1.18E-2

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 C    A                    AUU 5 hsa-miR-1296-5p
           CUCU     CCUCGGU   CCCGGG      
           GAGA     GGAGCCA   GGGCCC      
target 5 A    CAGAG       GCC      C   3 OR2A1-AS1
Start: 30  End: 50
Energy: -36.1 kcal/mol
Align Score: 0.001563
miRNA  3            C              AUU 5 hsa-miR-1296-5p
           CCUC UACCU GG     UCCCGGG      
           GGGG AUGGG CC     GGGGCUC      
target 5 U    A     A  AUCCU       A   3 OR2A1-AS1
Start: 235  End: 255
Energy: -29.3 kcal/mol
Align Score: 0.00698
miRNA  3 CCUCUA             GA    5 hsa-miR-1296-5p
                CCUC GGUCCCGG  UU    
                GGAG CCAGGGCC  GA    
target 5      G    C        GA  C 3 OR2A1-AS1
Start: 171  End: 191
Energy: -31.9 kcal/mol
Align Score: 0.005077
miRNA  3 CCUCUA             GA    5 hsa-miR-1296-5p
                CCUC GGUCCCGG  UU    
                GGAG CCAGGGCC  GA    
target 5      G    C        GA  C 3 OR2A1-AS1
Start: 64  End: 84
Energy: -31.9 kcal/mol
Align Score: 0.003811
miRNA  3 CCUCUA             GA    5 hsa-miR-1296-5p
                CCUC GGUCCCGG  UU    
                GGAG CCAGGGCC  GA    
target 5      G    C        GA  C 3 OR2A1-AS1
Start: 149  End: 169
Energy: -31.9 kcal/mol
Align Score: 0.00787

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for OR2A1-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1296-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for ERBB2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 7q35

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.