Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

17p11.2

lncRNA

CCDC144NL-AS1 ( ENSG00000233098)

miRNA

hsa-miR-185-3p (MIMAT0004611)

mRNA

STIM1 (ENSG00000167323)

Disease

TGCT

FDR

3.92E-6

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 C                                    A 5 hsa-miR-185-3p
           UGGUCUCC  UUUCGGU              CGGGG    
           GCUGGAGG  GGAGCCG              GCCUC    
target 5 U        CU       CGGGAGCGCGGCUC     G 3 CCDC144NL-AS1
Start: 105  End: 125
Energy: -30.6 kcal/mol
Align Score: 0.00659
miRNA  3       CU                A 5 hsa-miR-185-3p
           CUGGU  CCUUUCGG  UCGGGG    
           GGCCA  GGGGAGCU  GGCCCC    
target 5 U     CC        GU      A 3 CCDC144NL-AS1
Start: 1078  End: 1098
Energy: -36.5 kcal/mol
Align Score: 0.004016
miRNA  3 CU      CUU           A 5 hsa-miR-185-3p
            GGUCUC   UCG GUCGGGG    
            CCAGAG   GGC CAGCCUC    
target 5  C      U     A       A 3 CCDC144NL-AS1
Start: 434  End: 454
Energy: -32 kcal/mol
Align Score: 0.004323
miRNA  3 C        UUUC         A 5 hsa-miR-185-3p
           UGGUCUCC     GGUCGGGG    
           ACCAGAGG     CCAGCUUC    
target 5 C        CCACU        G 3 CCDC144NL-AS1
Start: 684  End: 704
Energy: -32 kcal/mol
Align Score: 0.006391
miRNA  3      U U              G       5 hsa-miR-185-3p
           CUGG C CCU    UUCGGUC  GGGA    
           GACC G GGA    GAGCCAG  UCCU    
target 5 A    U U   UGAA       AG    C 3 CCDC144NL-AS1
Start: 527  End: 547
Energy: -30.8 kcal/mol
Align Score: 0.008907

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for CCDC144NL-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-185-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for STIM1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 17p11.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.