Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

3q29

lncRNA

MELTF-AS1 ( ENSG00000228109)

miRNA

hsa-miR-197-5p (MIMAT0022691)

mRNA

IGFBP5 (ENSG00000115461)

Disease

TGCT

FDR

1.14E-7

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3    A                        A    C 5 hsa-miR-197-5p
           GG  GGG      UGACG   GGAGAG UGGG    
           CC  CCC      GCUGC   CCUCUC ACCC    
target 5 A  CG   AGGGAU     ACU      C    U 3 MELTF-AS1
Start: 209  End: 229
Energy: -33.8 kcal/mol
Align Score: 0.001344
miRNA  3 G     UGA      A A       5 hsa-miR-197-5p
           GAGGG   CGGGAG G UGGGC    
           CUCCC   GCCCUC C GCCCG    
target 5 G              C G     C 3 MELTF-AS1
Start: 187  End: 207
Energy: -34.3 kcal/mol
Align Score: 0.00419
miRNA  3             A   G                         C 5 hsa-miR-197-5p
           GGAGGG   UG CGG A              GAG  AUGGG    
           CCUCCC   GC GCC U              CUC  UACCC    
target 5 U      CGC  C   G UUUGAGCGUUCACA   AU     A 3 MELTF-AS1
Start: 128  End: 148
Energy: -29.7 kcal/mol
Align Score: 0.003101
miRNA  3    A                        A    C 5 hsa-miR-197-5p
           GG  GGG      UGACG   GGAGAG UGGG    
           CC  CCC      GCUGC   CCUCUC ACCC    
target 5 A  CG   AGGGAU     ACU      C    U 3 MELTF-AS1
Start: 157  End: 177
Energy: -33.8 kcal/mol
Align Score: 0.001069
miRNA  3    A                        A    C 5 hsa-miR-197-5p
           GG  GGG      UGACG   GGAGAG UGGG    
           CC  CCC      GCUGC   CCUCUC ACCC    
target 5 A  CG   AGGGAU     ACU      C    U 3 MELTF-AS1
Start: 317  End: 337
Energy: -33.8 kcal/mol
Align Score: 0.001994

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for MELTF-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-197-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for IGFBP5

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 3q29

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.