Basic Info

Starting a new search ...

Basic Information for the CNV-ceRNA event

Cytoband

20q11.23

lncRNA

SNHG17 ( ENSG00000196756)

miRNA

hsa-miR-665 (MIMAT0004952)

mRNA

CNR2 (ENSG00000188822)

Disease

TGCT

FDR

1.23E-2

Reported as biomarkers
0

Circulating
0

Drug resistent
1

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3          AG      G   A 5 hsa-miR-665
           UCCC CGG  UCGGAG ACC    
           AGGG GCC  GGCCUU UGG    
target 5 C    C   G       G   G 3 SNHG17
Start: 127  End: 147
Energy: -33.4 kcal/mol
Align Score: 0.005017
miRNA  3          AG      G   A 5 hsa-miR-665
           UCCC CGG  UCGGAG ACC    
           AGGG GCC  GGCCUU UGG    
target 5 C    C   G       G   G 3 SNHG17
Start: 71  End: 91
Energy: -33.4 kcal/mol
Align Score: 0.004432
miRNA  3 UCCCC                  5 hsa-miR-665
               GGAGUCGGAGGAC CA    
               CCUCAGCUUCCUG GU    
target 5     A             A  A 3 SNHG17
Start: 568  End: 588
Energy: -30.6 kcal/mol
Align Score: 0.008572
miRNA  3                                   A     A 5 hsa-miR-665
           UCCCCGGAG               U     CGG GGACC    
           AGGGGCUUC               G     GCC CCUGG    
target 5 G         CACUGUCCGCGGGGU AGAAU         G 3 SNHG17
Start: 392  End: 412
Energy: -30.4 kcal/mol
Align Score: 0.007603
miRNA  3 U   C    U             A 5 hsa-miR-665
           CCC GGAG    CGGAGG ACC    
           GGG CCUC    GCCUUC UGG    
target 5 U   C    UUCU      G   G 3 SNHG17
Start: 659  End: 679
Energy: -30.9 kcal/mol
Align Score: 0.009339

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SNHG17

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-665

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CNR2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 20q11.23

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.