Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

19q13.11

lncRNA

SCGB1B2P ( ENSG00000268751)

miRNA

hsa-miR-1180-3p (MIMAT0005825)

mRNA

TNIP2 (ENSG00000168884)

Disease

KICH

FDR

1.44E-3

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
miRNA  3'   UGUGUGGGUGCGCUCGGCCUUU 5' hsa-miR-1180-3p
                   ||||   ||||||| 
target 5' AUACCACCUCACGGA-GCCGGAAA SCGB1B2P
Start: 108  End: 115
Site type: 8mer-1a
Context++ Score: -0.583
miRNA  3'   UGUGUGGGUGCGCUCGGCCUUU 5' hsa-miR-1180-3p
                   ||||   ||||||| 
target 5' AUACCACCUCACGGA-GCCGGAAA SCGB1B2P
Start: 263  End: 270
Site type: 8mer-1a
Context++ Score: -0.544
RNAbybrid target site prediction
miRNA  3    U         G            5 hsa-miR-1180-3p
           UG GUGG GUGC CUCGGCCUUU    
           AC CACC CACG GAGCCGGAAA    
target 5 U       U               G 3 SCGB1B2P
Start: 94  End: 114
Energy: -37.1 kcal/mol
Align Score: 0.000413
miRNA  3    U         G            5 hsa-miR-1180-3p
           UG GUGG GUGC CUCGGCCUUU    
           AC CACC CACG GAGCCGGAAA    
target 5 U       U               G 3 SCGB1B2P
Start: 249  End: 269
Energy: -37.1 kcal/mol
Align Score: 0.000784

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SCGB1B2P

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1180-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for TNIP2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 19q13.11

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.