Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

17p11.2

lncRNA

CCDC144NL-AS1 ( ENSG00000233098)

miRNA

hsa-miR-760 (MIMAT0004957)

mRNA

HIST1H3D (ENSG00000197409)

Disease

TGCT

FDR

1.53E-2

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 A         G                  5 hsa-miR-760
           GGGGUGUCU GG       UCUCGGC    
           CUCCACAGG CC       AGGGCUG    
target 5 G         G  UGUGAGC       G 3 CCDC144NL-AS1
Start: 290  End: 310
Energy: -31.8 kcal/mol
Align Score: 0.003687
miRNA  3 A      U                     5 hsa-miR-760
           GGGGUG  CUGGG     UCUC GGC    
           CCCCAC  GGCCC     AGAG CCG    
target 5 G      UC     AAGGC    U   G 3 CCDC144NL-AS1
Start: 1097  End: 1117
Energy: -33.8 kcal/mol
Align Score: 0.008974
miRNA  3 A  GG                      C 5 hsa-miR-760
           GG  UGUCUGGG        UCUCGG    
           CC  GCAGACCU        AGAGCC    
target 5 G  AU        GUGGAUGA      A 3 CCDC144NL-AS1
Start: 178  End: 198
Energy: -30.5 kcal/mol
Align Score: 0.006793
miRNA  3 A         G                  5 hsa-miR-760
           GGGGUGUCU GG       UCUCGGC    
           CUCCACAGG CC       AGGGCUG    
target 5 G         G  UGUGAGC       G 3 CCDC144NL-AS1
Start: 447  End: 467
Energy: -31.8 kcal/mol
Align Score: 0.006099
miRNA  3 A  GG                      C 5 hsa-miR-760
           GG  UGUCUGGG        UCUCGG    
           CC  GCAGACCU        AGAGCC    
target 5 G  AU        GUGGAUGA      A 3 CCDC144NL-AS1
Start: 520  End: 540
Energy: -30.5 kcal/mol
Align Score: 0.008883

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for CCDC144NL-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-760

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for HIST1H3D

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 17p11.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.