Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

2p13.3

lncRNA

PCBP1-AS1 ( ENSG00000179818)

miRNA

hsa-miR-4674 (MIMAT0019756)

mRNA

SNCG (ENSG00000173267)

Disease

THYM

FDR

4.14E-3

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3                                     5 hsa-miR-4674
           UCGG   CGCGCAGGG       CUC  GGGUC    
           GGCC   GCGUGUUUC       GAG  CCCAG    
target 5 A    CCU         UGUUGUG   GU     A 3 PCBP1-AS1
Start: 218  End: 238
Energy: -30.1 kcal/mol
Align Score: 0.009264
miRNA  3    GG  C                 5 hsa-miR-4674
           UC  CG GCAGGGCUCG GGUC    
           AG  GU UGUCCCGGGC CCAG    
target 5 C  AU  C          U    U 3 PCBP1-AS1
Start: 132  End: 152
Energy: -33.7 kcal/mol
Align Score: 0.003255
miRNA  3    GG  C                 5 hsa-miR-4674
           UC  CG GCAGGGCUCG GGUC    
           AG  GU UGUCCCGGGC CCAG    
target 5 C  AU  C          U    U 3 PCBP1-AS1
Start: 330  End: 350
Energy: -33.7 kcal/mol
Align Score: 0.004313
miRNA  3 U   CG   C                5 hsa-miR-4674
           CGG   CG AGGGCUCG  GGUC    
           GCC   GC UCCUGAGU  CCGG    
target 5 U   UCA  C        AG    G 3 PCBP1-AS1
Start: 126  End: 146
Energy: -30.7 kcal/mol
Align Score: 0.005593
miRNA  3       G                              5 hsa-miR-4674
           UCGGC C            GCAGGGCUCG GGUC    
           AGCCG G            UGUCCCGGGC CCAG    
target 5 U     G ACUACAGAUGUC          U    U 3 PCBP1-AS1
Start: 560  End: 580
Energy: -38 kcal/mol
Align Score: 0.001437

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for PCBP1-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-4674

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SNCG

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 2p13.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.