Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

8q24.3

lncRNA

C8orf31 ( ENSG00000177335)

miRNA

hsa-miR-940 (MIMAT0004983)

mRNA

ZNF24 (ENSG00000172466)

Disease

THYM

FDR

8.51E-6

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 CC     C                 AA 5 hsa-miR-940
            CCUCG     CCC CGGGA CGG     
            GGGGC     GGG GCCCU GCC     
target 5  C     AUCAU   A     A   A  3 C8orf31
Start: 334  End: 354
Energy: -33.3 kcal/mol
Align Score: 0.002845
miRNA  3                                     AA 5 hsa-miR-940
           CCCCU    CGCCC   CCGGGA         CGG     
           GGGGA    GCGGG   GGCCCU         GCC     
target 5 G     GAGG     AAA      CACAGCAGG   C  3 C8orf31
Start: 450  End: 470
Energy: -36.2 kcal/mol
Align Score: 0.000987
miRNA  3      UC C                AA 5 hsa-miR-940
           CCCC  G CCCCGG     GACGG     
           GGGG  C GGGGCU     CUGCC     
target 5 A    CC A      GCUGG     A  3 C8orf31
Start: 437  End: 457
Energy: -33.5 kcal/mol
Align Score: 0.006579
miRNA  3 CC                             A       5 hsa-miR-940
            CCUC  GCCCC              CGGG CGGAA    
            GGAG  UGGGG              GCCC GCCUU    
target 5  A    GC     GAGAAGUGCACGCU    A     C 3 C8orf31
Start: 189  End: 209
Energy: -31.3 kcal/mol
Align Score: 0.008801
miRNA  3 C                                       AA 5 hsa-miR-940
           CCCUCG C               CCCCGG     GACGG     
           GGGAGC G               GGGGCU     CUGCC     
target 5 A      U UACGCACAGGGCCCA      GCUGG     A  3 C8orf31
Start: 84  End: 104
Energy: -33 kcal/mol
Align Score: 0.001938

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for C8orf31

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-940

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for ZNF24

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 8q24.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.