Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

22q12.1

lncRNA

TTC28-AS1 ( ENSG00000235954)

miRNA

hsa-miR-139-3p (MIMAT0004552)

mRNA

ELAVL1 (ENSG00000066044)

Disease

ESCA

FDR

2.65E-9

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3                  CGCA    U 5 hsa-miR-139-3p
           UGAGGUU  GUCCCGG    GAGG    
           GCUCCGA  CAGGGCC    CUCC    
target 5 U       GU       CAC     U 3 TTC28-AS1
Start: 139  End: 159
Energy: -34.4 kcal/mol
Align Score: 0.002059
miRNA  3    A                   C                5 hsa-miR-139-3p
           UG   GGUU GUCC   CGGCG         AGAGGU    
           GC   CCAG CAGG   GCCGC         UCUCCA    
target 5 G  CUG    C    GAU     CCACUUUGU      C 3 TTC28-AS1
Start: 433  End: 453
Energy: -30.4 kcal/mol
Align Score: 0.00846
miRNA  3         G       G   A       U 5 hsa-miR-139-3p
           UGAGGUU   UCCCG CGC    GAGG    
           GCUUCAG   GGGGC GCG    CUUU    
target 5 A       AGA     G   CUGG    C 3 TTC28-AS1
Start: 318  End: 338
Energy: -31.1 kcal/mol
Align Score: 0.006258

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for TTC28-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-139-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for ELAVL1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 22q12.1

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.