Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

3p25.3

lncRNA

THUMPD3-AS1 ( ENSG00000206573)

miRNA

hsa-miR-149-3p (MIMAT0004609)

mRNA

WNT1 (ENSG00000125084)

Disease

ESCA

FDR

4.02E-5

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 C     G     A           A 5 hsa-miR-149-3p
           GUGUC GGGGC GGG    AGGG    
           CGCGG CUCCG CCC    UCCC    
target 5 C           C   GGGU    A 3 THUMPD3-AS1
Start: 5  End: 25
Energy: -31.3 kcal/mol
Align Score: 0.003937
miRNA  3    UG  G          G   A 5 hsa-miR-149-3p
           CG  UC GGGGCAGGGA  GG    
           GC  GG UUCUGUCCCU  CC    
target 5 A  UG  A          GA  G 3 THUMPD3-AS1
Start: 15  End: 35
Energy: -30.1 kcal/mol
Align Score: 0.008879
miRNA  3 CG               A           A 5 hsa-miR-149-3p
            UGUCGG     GGGC GGG    AGGG    
            GCGGCC     UCCG CCC    UCCC    
target 5  G      GCGGC    C   GGGU    A 3 THUMPD3-AS1
Start: 11  End: 31
Energy: -31.3 kcal/mol
Align Score: 0.006137
miRNA  3 CG               A           A 5 hsa-miR-149-3p
            UGUCGG     GGGC GGG    AGGG    
            GCGGCC     UCCG CCC    UCCC    
target 5  G      GCGGC    C   GGGU    A 3 THUMPD3-AS1
Start: 1  End: 21
Energy: -31.3 kcal/mol
Align Score: 0.005187
miRNA  3    G     G   A    GA   A 5 hsa-miR-149-3p
          CGU  UCGG GGC   GG  GGG    
          GCG  AGCC CCG   CC  CCU    
target 5    GA    G   GGG  G    A 3 THUMPD3-AS1
Start: 1  End: 21
Energy: -27.2 kcal/mol
Align Score: 0.009911

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for THUMPD3-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-149-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for WNT1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 3p25.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.