Basic Info

Starting a new search ...

Basic Information for the CNV-ceRNA event

Cytoband

2p13.3

lncRNA

PCBP1-AS1 ( ENSG00000179818)

miRNA

hsa-miR-296-3p (MIMAT0004679)

mRNA

KCNH1 (ENSG00000143473)

Disease

BLCA

FDR

6.12E-4

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 C       A      UU    G 5 hsa-miR-296-3p
           CUCUCGG GGUGGG  GGGA    
           GGGAGCC CCACUC  UCCU    
target 5 A              CU    G 3 PCBP1-AS1
Start: 15  End: 35
Energy: -32.6 kcal/mol
Align Score: 0.005851
miRNA  3 C                  UG           5 hsa-miR-296-3p
           CUCU     CGG   AGG  GGUUGGGAG    
           GAGG     GCC   UCC  CCAGCUCUC    
target 5 A    CUGAU   AAC   UU         A 3 PCBP1-AS1
Start: 327  End: 347
Energy: -31 kcal/mol
Align Score: 0.009761
miRNA  3 C                  UG           5 hsa-miR-296-3p
           CUCU     CGG   AGG  GGUUGGGAG    
           GAGG     GCC   UCC  CCAGCUCUC    
target 5 A    CUGAU   AAC   UU         A 3 PCBP1-AS1
Start: 176  End: 196
Energy: -31 kcal/mol
Align Score: 0.007005
miRNA  3      U          UG  UU       5 hsa-miR-296-3p
           CCUC     CGGAGG  GG  GGGAG    
           GGAG     GCCUCC  UC  CCUUC    
target 5 A    CUUCU      UG  U      A 3 PCBP1-AS1
Start: 319  End: 339
Energy: -33.9 kcal/mol
Align Score: 0.002916
miRNA  3 C       A           AG 5 hsa-miR-296-3p
           CUCUCGG GGUGGGUUGGG     
           GAGGGCU UCAUUCAGCCU     
target 5 C       C           C  3 PCBP1-AS1
Start: 210  End: 230
Energy: -31 kcal/mol
Align Score: 0.00833

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for PCBP1-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-296-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for KCNH1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 2p13.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.