Basic Info

Starting a new search ...

Basic Information for the CNV-ceRNA event

Cytoband

2q13

lncRNA

MIR4435-2HG ( ENSG00000172965)

miRNA

hsa-miR-654-5p (MIMAT0003330)

mRNA

EPSTI1 (ENSG00000133106)

Disease

BLCA

FDR

4.17E-6

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 C    ACA  A          U 5 hsa-miR-654-5p
           GUGU   AG CGCCGGGUGG    
           CACA   UC GUGGCCCACC    
target 5 A         A          U 3 MIR4435-2HG
Start: 707  End: 727
Energy: -32.1 kcal/mol
Align Score: 0.007574
miRNA  3         A   C          U 5 hsa-miR-654-5p
           CGUGUAC AGA GCCGG GUGG    
           GCACAUG UCU CGGCU CACU    
target 5 A           U     A    G 3 MIR4435-2HG
Start: 361  End: 381
Energy: -31.2 kcal/mol
Align Score: 0.004472
miRNA  3       A    A           G         5 hsa-miR-654-5p
           CGUGU CAAG        CGCC  GGUGGU    
           GCACA GUUC        GUGG  CCACCA    
target 5 A          CUGGGAAG    AG      G 3 MIR4435-2HG
Start: 176  End: 196
Energy: -30.6 kcal/mol
Align Score: 0.00827
miRNA  3       A    A           G         5 hsa-miR-654-5p
           CGUGU CAAG        CGCC  GGUGGU    
           GCACA GUUC        GUGG  CCACCA    
target 5 A          CUGGGAAG    AG      G 3 MIR4435-2HG
Start: 109  End: 129
Energy: -30.6 kcal/mol
Align Score: 0.009929
miRNA  3       A    A           G         5 hsa-miR-654-5p
           CGUGU CAAG        CGCC  GGUGGU    
           GCACA GUUC        GUGG  CCACCA    
target 5 A          CUGGGAAG    AG      G 3 MIR4435-2HG
Start: 130  End: 150
Energy: -30.6 kcal/mol
Align Score: 0.008058

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for MIR4435-2HG

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-654-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for EPSTI1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 2q13

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.