Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

2p13.3

lncRNA

PCBP1-AS1 ( ENSG00000179818)

miRNA

hsa-miR-675-5p (MIMAT0004284)

mRNA

CALN1 (ENSG00000183166)

Disease

BLCA

FDR

5.77E-4

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 G  A       GG    G          5 hsa-miR-675-5p
           UG CACC CG  AGAG CG  UGGU    
           GC GUGG GC  UCUC GC  ACCA    
target 5 U  A    U  AA    G  UC    C 3 PCBP1-AS1
Start: 336  End: 356
Energy: -30.8 kcal/mol
Align Score: 0.009839
miRNA  3 GUGA         GA    U     5 hsa-miR-675-5p
              CACCCGGGA  GGCG GGU    
              GUGGGCUUU  CUGC CCA    
target 5    A         GA        G 3 PCBP1-AS1
Start: 321  End: 341
Energy: -32 kcal/mol
Align Score: 0.009234
miRNA  3 G G      G                                         5 hsa-miR-675-5p
           U ACACCC             GGAGA              GGCGUGGU    
           G UGUGGG             CCUCU              CUGCACCA    
target 5 U G      AUUGCUUCCAGUA     GUGUGUAACAAAAG        U 3 PCBP1-AS1
Start: 348  End: 368
Energy: -32.5 kcal/mol
Align Score: 0.00776
miRNA  3 G  A       GG    G          5 hsa-miR-675-5p
           UG CACC CG  AGAG CG  UGGU    
           GC GUGG GC  UCUC GC  ACCA    
target 5 U  A    U  AA    G  UC    C 3 PCBP1-AS1
Start: 59  End: 79
Energy: -30.8 kcal/mol
Align Score: 0.007978
miRNA  3                          G    UG    5 hsa-miR-675-5p
           GUGAC    ACCCGGGAG    AG   CG  GU    
           CACUG    UGGGCCCUC    UC   GU  CG    
target 5 G     ACUC         AGGG  GAG  UG  G 3 PCBP1-AS1
Start: 267  End: 287
Energy: -33 kcal/mol
Align Score: 0.004189

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for PCBP1-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-675-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CALN1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 2p13.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.