Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

17q22

lncRNA

TSPOAP1-AS1 ( ENSG00000265148)

miRNA

hsa-miR-1291 (MIMAT0005881)

mRNA

ERN1 (ENSG00000178607)

Disease

BRCA

FDR

2.09E-3

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
miRNA  3' ugACGACC-AGAAGUCAGUCCCGGu 5' hsa-miR-1291
            ||||||  ||  || ||||||| 
target 5' gcTGCTGGAGCTGGAGCCAGGGCCt 3' TSPOAP1-AS1
Start: 330  End: 354
Energy: -35.32 kcal/mol
Align Score: 169
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3'    A  A          A                  5' hsa-miR-1291
           UG CG CCA GAAGUC         GUCCCGGU    
           GC GC GGU CUUCGG         CAGGGCCA    
target 5' U  C  A   C      CACCGUCUC        U 3' TSPOAP1-AS1
Start: 652  End: 672
Energy: -33.7 kcal/mol
Align Score: 0.00566
miRNA  3'    A  A          A                  5' hsa-miR-1291
           UG CG CCA GAAGUC         GUCCCGGU    
           GC GC GGU CUUCGG         CAGGGCCA    
target 5' U  C  A   C      CACCGUCUC        U 3' TSPOAP1-AS1
Start: 566  End: 586
Energy: -33.7 kcal/mol
Align Score: 0.005495
miRNA  3'    A  A          A                  5' hsa-miR-1291
           UG CG CCA GAAGUC         GUCCCGGU    
           GC GC GGU CUUCGG         CAGGGCCA    
target 5' U  C  A   C      CACCGUCUC        U 3' TSPOAP1-AS1
Start: 566  End: 586
Energy: -33.7 kcal/mol
Align Score: 0.004715
miRNA  3'    A  A          A                  5' hsa-miR-1291
           UG CG CCA GAAGUC         GUCCCGGU    
           GC GC GGU CUUCGG         CAGGGCCA    
target 5' U  C  A   C      CACCGUCUC        U 3' TSPOAP1-AS1
Start: 614  End: 634
Energy: -33.7 kcal/mol
Align Score: 0.005824
miRNA  3' U    A    GAA         A          5' hsa-miR-1291
           GACG  CCA         GUC GUCCCGGU    
           CUGC  GGU         CAG CAGGGCCA    
target 5' C    AG   AGCCAUCAG   C        G 3' TSPOAP1-AS1
Start: 585  End: 605
Energy: -35.2 kcal/mol
Align Score: 0.002741

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for TSPOAP1-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1291

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for ERN1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 17q22

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.