Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

11q12.3

lncRNA

SNHG1 ( ENSG00000255717)

miRNA

hsa-miR-1291 (MIMAT0005881)

mRNA

SLC2A1 (ENSG00000117394)

Disease

BRCA

FDR

4.22E-12

Reported as biomarkers
1

Circulating
0

Drug resistent
14

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
miRNA  3' UGACGACCAGAAGUCA----GUCCCGGU 5' hsa-miR-1291
               ||||||||       ||||||| 
target 5'      UGGUCUUCCUCCUUUCAGGGCCA SNHG1
Start: 104  End: 111
Site type: 8mer-1a
Context++ Score: -0.549
RNAbybrid target site prediction
miRNA  3 UG   A   GA    C        U 5 hsa-miR-1291
            ACG CCA   AGU AGUCCCGG    
            UGU GGU   UCA UCAGGGCC    
target 5  A   A   AGC   U        U 3 SNHG1
Start: 509  End: 529
Energy: -31.6 kcal/mol
Align Score: 0.007107
miRNA  3      G          UC               5 hsa-miR-1291
           UGAC   ACCAGAAG      AGUCCCGGU    
           ACUG   UGGUCUUC      UCAGGGCCA    
target 5 U    ACU        CUCCUU         G 3 SNHG1
Start: 81  End: 101
Energy: -38.7 kcal/mol
Align Score: 0.000789
miRNA  3 U        A A   CAG         5 hsa-miR-1291
           GACG ACC G AGU   UCCCGGU    
           CUGC UGG C UCA   AGGGCCA    
target 5 C    U         A         G 3 SNHG1
Start: 179  End: 199
Energy: -30.3 kcal/mol
Align Score: 0.005492
miRNA  3 U        A A   CAG         5 hsa-miR-1291
           GACG ACC G AGU   UCCCGGU    
           CUGC UGG C UCA   AGGGCCA    
target 5 C    U         A         G 3 SNHG1
Start: 298  End: 318
Energy: -30.3 kcal/mol
Align Score: 0.009807
miRNA  3 U        A A   CAG         5 hsa-miR-1291
           GACG ACC G AGU   UCCCGGU    
           CUGC UGG C UCA   AGGGCCA    
target 5 C    U         A         G 3 SNHG1
Start: 473  End: 493
Energy: -30.3 kcal/mol
Align Score: 0.009423

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SNHG1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1291

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SLC2A1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 11q12.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.