Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

9q34.11

lncRNA

LINC00963 ( ENSG00000204054)

miRNA

hsa-miR-1296-5p (MIMAT0005794)

mRNA

MCM2 (ENSG00000073111)

Disease

BRCA

FDR

1.11E-33

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 CC                               U 5 hsa-miR-1296-5p
            UCUACCUCGGUCC CG           GGAU    
            AGAUGGGGCCAGG GC           CCUG    
target 5  A             U  AGUGGCUCACG    U 3 LINC00963
Start: 1260  End: 1280
Energy: -34.2 kcal/mol
Align Score: 0.006518
miRNA  3     C                     AUU 5 hsa-miR-1296-5p
           CCU     UACCUCG  GUCCCGGG      
           GGA     AUGGGGC  CAGGGCCC      
target 5 U   AGCCC       AG        A   3 LINC00963
Start: 738  End: 758
Energy: -34.5 kcal/mol
Align Score: 0.008185
miRNA  3       UA        C         5 hsa-miR-1296-5p
           CCU C  CCUCGGUC CGGGAUU    
           GGA G  GGAGUUGG GCCCUGG    
target 5 A   C GG        A       U 3 LINC00963
Start: 229  End: 249
Energy: -32.5 kcal/mol
Align Score: 0.00765
miRNA  3             UC          AUU 5 hsa-miR-1296-5p
           CCUCU   ACC  GGUCCC GGG      
           GGAGA   UGG  CCAGGG CCC      
target 5 U     CAC   C       A   A   3 LINC00963
Start: 99  End: 119
Energy: -32.7 kcal/mol
Align Score: 0.005555
miRNA  3                        CC    AUU 5 hsa-miR-1296-5p
           CCUCUACCU        CG GU  CGGG      
           GGAGAUGGA        GC CA  GCCC      
target 5 U         AGGAGGAU  U  CC    A   3 LINC00963
Start: 303  End: 323
Energy: -29.7 kcal/mol
Align Score: 0.006399

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LINC00963

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1296-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for MCM2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 9q34.11

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.