Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

1p35.3

lncRNA

SNHG12 ( ENSG00000197989)

miRNA

hsa-miR-296-3p (MIMAT0004679)

mRNA

ICAM1 (ENSG00000090339)

Disease

BRCA

FDR

7.66E-3

Reported as biomarkers
0

Circulating
0

Drug resistent
10

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3           A    UG       AG 5 hsa-miR-296-3p
           CCU CUCGG   GG  GGUUGGG     
           GGA GAGCC   CC  CCAACCC     
target 5 C   G     GGG  UU       G  3 SNHG12
Start: 111  End: 131
Energy: -36.2 kcal/mol
Align Score: 0.001379
miRNA  3           A    UG       AG 5 hsa-miR-296-3p
           CCU CUCGG   GG  GGUUGGG     
           GGA GAGCC   CC  CCAACCC     
target 5 C   G     GGG  UU       G  3 SNHG12
Start: 119  End: 139
Energy: -36.2 kcal/mol
Align Score: 0.003908
miRNA  3           A    UG       AG 5 hsa-miR-296-3p
           CCU CUCGG   GG  GGUUGGG     
           GGA GAGCC   CC  CCAACCC     
target 5 C   G     GGG  UU       G  3 SNHG12
Start: 149  End: 169
Energy: -36.2 kcal/mol
Align Score: 0.002416
miRNA  3           A    UG       AG 5 hsa-miR-296-3p
           CCU CUCGG   GG  GGUUGGG     
           GGA GAGCC   CC  CCAACCC     
target 5 C   G     GGG  UU       G  3 SNHG12
Start: 148  End: 168
Energy: -36.2 kcal/mol
Align Score: 0.004677
miRNA  3 C       AG     UU       5 hsa-miR-296-3p
           CUCUCGG  GUGGG  GGGAG    
           GGGGGCC  CGCCC  CUCUC    
target 5 C       G      UU     G 3 SNHG12
Start: 17  End: 37
Energy: -34.9 kcal/mol
Align Score: 0.005905

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SNHG12

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-296-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for ICAM1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 1p35.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.