Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

6p22.1

lncRNA

HCG18 ( ENSG00000231074)

miRNA

hsa-miR-326 (MIMAT0000756)

mRNA

NOB1 (ENSG00000141101)

Disease

BRCA

FDR

1.45E-220

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
miRNA  3' gaCCUCCUUCCC-GGGUCUCc 5' hsa-miR-326
            | | |||||| ||||||| 
target 5' ggGCAAGAAGGGACCCAGAGg 3' HCG18
Start: 397  End: 417
Energy: -31.92 kcal/mol
Align Score: 165
miRNA  3' gaCCUCCUUCCC-GGGUCUCc 5' hsa-miR-326
            | | |||||| ||||||| 
target 5' ggGCAAGAAGGGACCCAGAGg 3' HCG18
Start: 113  End: 133
Energy: -31.92 kcal/mol
Align Score: 165
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3'        CUU   G          5' hsa-miR-326
           GACCUC   CCC  GGUCUCC    
           CUGGAG   GGG  CCGGGGG    
target 5' G      U     AG       A 3' HCG18
Start: 135  End: 155
Energy: -31.2 kcal/mol
Align Score: 0.005681
miRNA  3' GA                       CC 5' hsa-miR-326
            CCUCCUUCC       CGGGUCU     
            GGAGGGAGG       GUCCGGG     
target 5'  G         AGAAAAA       U  3' HCG18
Start: 214  End: 234
Energy: -29.4 kcal/mol
Align Score: 0.006737
miRNA  3'        CUU   G          5' hsa-miR-326
           GACCUC   CCC  GGUCUCC    
           CUGGAG   GGG  CCGGGGG    
target 5' G      U     AG       A 3' HCG18
Start: 94  End: 114
Energy: -31.2 kcal/mol
Align Score: 0.009105
miRNA  3        CUU   G          5 hsa-miR-326
           GACCUC   CCC  GGUCUCC    
           CUGGAG   GGG  CCGGGGG    
target 5 G      U     AG       A 3 HCG18
Start: 135  End: 155
Energy: -31.2 kcal/mol
Align Score: 0.005681
miRNA  3 GA                       CC 5 hsa-miR-326
            CCUCCUUCC       CGGGUCU     
            GGAGGGAGG       GUCCGGG     
target 5  G         AGAAAAA       U  3 HCG18
Start: 214  End: 234
Energy: -29.4 kcal/mol
Align Score: 0.006737

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for HCG18

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-326

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for NOB1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 6p22.1

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.