Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

12q13.13

lncRNA

RP11-983P16.4 ( ENSG00000257337)

miRNA

hsa-miR-328-3p (MIMAT0000752)

mRNA

SFRP1 (ENSG00000104332)

Disease

BRCA

FDR

1.26E-35

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3                         C       C 5 hsa-miR-328-3p
           UGCCU    UCCCGUCU   CUC    CGGU    
           AUGGG    AGGGCAGG   GAG    GCCA    
target 5 A     CCGU        UUU   UCGU    C 3 RP11-983P16.4
Start: 145  End: 165
Energy: -30.1 kcal/mol
Align Score: 0.008957
miRNA  3 UG         U       GG    5 hsa-miR-328-3p
            CCUUC CCG CUCUCCC  UC    
            GGAAG GGC GAGAGGG  AG    
target 5  A     U   U       GG  A 3 RP11-983P16.4
Start: 54  End: 74
Energy: -34.8 kcal/mol
Align Score: 0.006379
miRNA  3 UG          GUC            5 hsa-miR-328-3p
            CCU   UCCC   UCUCCCGGUC    
            GGA   AGGG   AGAGGGUCAG    
target 5  A   GCU    A            A 3 RP11-983P16.4
Start: 431  End: 451
Energy: -33.7 kcal/mol
Align Score: 0.003419
miRNA  3 U   U                 G     5 hsa-miR-328-3p
           GCC UCCCGUCUCU    CCC GUC    
           UGG AGGGUAGGGA    GGG UGG    
target 5 G              UAAG   G   A 3 RP11-983P16.4
Start: 26  End: 46
Energy: -31.3 kcal/mol
Align Score: 0.007604
miRNA  3                         C       C 5 hsa-miR-328-3p
           UGCCU    UCCCGUCU   CUC    CGGU    
           AUGGG    AGGGCAGG   GAG    GCCA    
target 5 A     CCGU        UUU   UCGU    C 3 RP11-983P16.4
Start: 38  End: 58
Energy: -30.1 kcal/mol
Align Score: 0.005644

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for RP11-983P16.4

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-328-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SFRP1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 12q13.13

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.