Basic Info

Starting a new search ...

Basic Information for the CNV-ceRNA event

Cytoband

17p13.3

lncRNA

MIR22HG ( ENSG00000186594)

miRNA

hsa-miR-339-5p (MIMAT0000764)

mRNA

BCL6 (ENSG00000113916)

Disease

BRCA

FDR

2.85E-12

Reported as biomarkers
1

Circulating
0

Drug resistent
3

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 G                C            5 hsa-miR-339-5p
           CAC  UCG AGGACCU CUGUC  CCU    
           GUG  GGC UCCUGGA GACAG  GGG    
target 5 G   CA   U       U     UU   U 3 MIR22HG
Start: 654  End: 674
Energy: -32.9 kcal/mol
Align Score: 0.005223
miRNA  3 G    CGA                      U 5 hsa-miR-339-5p
           CACU         GGACCUC C UGUCCC    
           GUGA         CCUGGAG G ACAGGG    
target 5 A    AGGACCAGG       A C      U 3 MIR22HG
Start: 462  End: 482
Energy: -31.6 kcal/mol
Align Score: 0.008561
miRNA  3 G A                                           U      5 hsa-miR-339-5p
           C   CUCGA             GGACCU             CCUG CCCU    
           G   GAGCU             UCUGGA             GGGC GGGA    
target 5 A GAG     GCUUUCCCCAUCA      AGGUGACAGAAAU    U    A 3 MIR22HG
Start: 211  End: 231
Energy: -30.2 kcal/mol
Align Score: 0.009077
miRNA  3 G   U      GA                           5 hsa-miR-339-5p
           CAC   CGAG         CCUCC      UGUCCCU    
           GUG   GUUC         GGAGG      GCAGGGA    
target 5 U   UCU    GAUUUGGUG     AGAUGU       G 3 MIR22HG
Start: 255  End: 275
Energy: -30.2 kcal/mol
Align Score: 0.007877
miRNA  3 G   U      GA                           5 hsa-miR-339-5p
           CAC   CGAG         CCUCC      UGUCCCU    
           GUG   GUUC         GGAGG      GCAGGGA    
target 5 U   UCU    GAUUUGGUG     AGAUGU       G 3 MIR22HG
Start: 327  End: 347
Energy: -30.2 kcal/mol
Align Score: 0.00756

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for MIR22HG

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-339-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for BCL6

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 17p13.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.