Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

17q21.32

lncRNA

HOXB-AS3 ( ENSG00000233101)

miRNA

hsa-miR-339-5p (MIMAT0000764)

mRNA

BACE1 (ENSG00000186318)

Disease

BRCA

FDR

2.38E-37

Reported as biomarkers
0

Circulating
0

Drug resistent
1

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 GC     A       CU    CU 5 hsa-miR-339-5p
            ACUCG GGACCUC  GUCC     
            UGGGC CCUGGAG  CGGG     
target 5  C     G       U     C  3 HOXB-AS3
Start: 114  End: 134
Energy: -30.9 kcal/mol
Align Score: 0.00551
miRNA  3 GC     A       CU    CU 5 hsa-miR-339-5p
            ACUCG GGACCUC  GUCC     
            UGGGC CCUGGAG  CGGG     
target 5  C     G       U     C  3 HOXB-AS3
Start: 207  End: 227
Energy: -30.9 kcal/mol
Align Score: 0.007251
miRNA  3                A         U      5 hsa-miR-339-5p
           GCAC    UCGAGG C CUC CUG CCCU    
           CGUG    GGCUCC G GAG GGC GGGA    
target 5 G    GUCA        A   C   C    U 3 HOXB-AS3
Start: 306  End: 326
Energy: -31.8 kcal/mol
Align Score: 0.004625
miRNA  3 GC     A       CU    CU 5 hsa-miR-339-5p
            ACUCG GGACCUC  GUCC     
            UGGGC CCUGGAG  CGGG     
target 5  C     G       U     C  3 HOXB-AS3
Start: 146  End: 166
Energy: -30.9 kcal/mol
Align Score: 0.006121
miRNA  3 GC     A       CU    CU 5 hsa-miR-339-5p
            ACUCG GGACCUC  GUCC     
            UGGGC CCUGGAG  CGGG     
target 5  C     G       U     C  3 HOXB-AS3
Start: 110  End: 130
Energy: -30.9 kcal/mol
Align Score: 0.005526

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for HOXB-AS3

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-339-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for BACE1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 17q21.32

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.