Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

16p13.3

lncRNA

SRRM2-AS1 ( ENSG00000205913)

miRNA

hsa-miR-939-5p (MIMAT0004982)

mRNA

SLC34A2 (ENSG00000157765)

Disease

BRCA

FDR

6.23E-14

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3                   A                5 hsa-miR-939-5p
           GUGGGGGUCU    CGG GUCGA    GGGGU    
           CACCCCCAGA    GCC UGGCU    UCCUA    
target 5 C          GACA   A     GACA     G 3 SRRM2-AS1
Start: 928  End: 948
Energy: -38.8 kcal/mol
Align Score: 0.002003
miRNA  3 GU               U                   5 hsa-miR-939-5p
            GGGGGUCU  CGGAG        CGA  GGGGU    
            CCUCCAGA  GCCUC        GCU  CCCCA    
target 5  U        AG     CCAGGACU   GG     G 3 SRRM2-AS1
Start: 526  End: 546
Energy: -37.6 kcal/mol
Align Score: 0.002132
miRNA  3 G       GU               GU 5 hsa-miR-939-5p
           UGGG  G  CUCGG AGUCGAGGG     
           GCCU  U  GGGCC UCAGCUUCC     
target 5 G    UG GU     U         A  3 SRRM2-AS1
Start: 165  End: 185
Energy: -36.9 kcal/mol
Align Score: 0.001434
miRNA  3                   A                5 hsa-miR-939-5p
           GUGGGGGUCU    CGG GUCGA    GGGGU    
           CACCCCCAGA    GCC UGGCU    UCCUA    
target 5 C          GACA   A     GACA     G 3 SRRM2-AS1
Start: 580  End: 600
Energy: -38.8 kcal/mol
Align Score: 0.000549

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SRRM2-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-939-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SLC34A2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 16p13.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.