Basic Info

Starting a new search ...

Basic Information for the CNV-ceRNA event

Cytoband

14q11.2

lncRNA

DHRS4-AS1 ( ENSG00000215256)

miRNA

hsa-miR-939-5p (MIMAT0004982)

mRNA

SLC34A2 (ENSG00000157765)

Disease

BRCA

FDR

2.37E-12

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 G                            GA        5 hsa-miR-939-5p
           UGGG            GGUCUCGGAGUC   GGGGU    
           GCCU            CCAGGGCCUCAG   CUCCG    
target 5 U    GUUUCCAGGCAG            AAA     G 3 DHRS4-AS1
Start: 109  End: 129
Energy: -38.3 kcal/mol
Align Score: 0.00248
miRNA  3 G                            GA        5 hsa-miR-939-5p
           UGGG            GGUCUCGGAGUC   GGGGU    
           GCCU            CCAGGGCCUCAG   CUCCG    
target 5 U    GUUUCCAGGCAG            AAA     G 3 DHRS4-AS1
Start: 156  End: 176
Energy: -38.3 kcal/mol
Align Score: 0.001911
miRNA  3 GU              GU         U 5 hsa-miR-939-5p
            GGGGGUCU  CGGA  CGA  GGGG    
            CUCCCAGA  GUCU  GCU  UCCU    
target 5  U        GG    GU   GU    U 3 DHRS4-AS1
Start: 191  End: 211
Energy: -32.9 kcal/mol
Align Score: 0.006419
miRNA  3           CU   A      A        5 hsa-miR-939-5p
           GUGG GGGU  CGG   GUCG  GGGGU    
           CGCC CCCG  GCC   CAGU  CCCCG    
target 5 G    U    CC   CGC    CG     C 3 DHRS4-AS1
Start: 33  End: 53
Energy: -34.8 kcal/mol
Align Score: 0.001965
miRNA  3 GU       U        A G     5 hsa-miR-939-5p
            GGGGGUC CGGAGUCG G GGU    
            UCCCCAG GUCUUAGC C CCA    
target 5  G                  G   U 3 DHRS4-AS1
Start: 460  End: 480
Energy: -36.7 kcal/mol
Align Score: 0.00079

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for DHRS4-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-939-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SLC34A2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 14q11.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.