Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

12q13.13

lncRNA

RP11-983P16.4 ( ENSG00000257337)

miRNA

hsa-miR-939-5p (MIMAT0004982)

mRNA

SLC34A2 (ENSG00000157765)

Disease

BRCA

FDR

1.23E-35

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 GU              U       U 5 hsa-miR-939-5p
            GGGGGUC UCGGAG CGAGGGG    
            CUUCCAG GGUCUC GUUCCCU    
target 5  C       U      U       C 3 RP11-983P16.4
Start: 1284  End: 1304
Energy: -35.6 kcal/mol
Align Score: 0.005371
miRNA  3 G      UCU                                 5 hsa-miR-939-5p
           UGGGGG     CGGA            GUCG   AGGGGU    
           ACCCCU     GCCU            CAGU   UCCCUA    
target 5 A      UUCCC    UGCAACAAUGAC    CUG      G 3 RP11-983P16.4
Start: 606  End: 626
Energy: -31.7 kcal/mol
Align Score: 0.007287
miRNA  3 G                                A       5 hsa-miR-939-5p
           UGGGGGU             CUCGGAGU  CG GGGGU    
           GCCUUCA             GAGUCUCA  GC CUUCA    
target 5 A       CAUCAUCACAGCU        UA        A 3 RP11-983P16.4
Start: 254  End: 274
Energy: -30 kcal/mol
Align Score: 0.006554
miRNA  3 G      UC                      A       5 hsa-miR-939-5p
           UGGGGG              UCG GAGUCG GGGGU    
           GCCCCC              GGC CUCAGC CCCCA    
target 5 G      CACUUGUUGCUCUU   G            G 3 RP11-983P16.4
Start: 446  End: 466
Energy: -39.5 kcal/mol
Align Score: 0.000327

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for RP11-983P16.4

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-939-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SLC34A2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 12q13.13

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.