Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

16p13.3

lncRNA

RP11-304L19.13 ( ENSG00000260778)

miRNA

hsa-miR-939-5p (MIMAT0004982)

mRNA

SLC34A2 (ENSG00000157765)

Disease

BRCA

FDR

2.35E-164

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
miRNA  3' guggggGUCUCGGAGUCGAGGGGu 5' hsa-miR-939-5p
                |||:||| | ||||||| 
target 5' ggaaggCAGGGCCCCCGCTCCCCg 3' RP11-304L19.13
Start: 310  End: 333
Energy: -31.86 kcal/mol
Align Score: 170
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3' G       UCU        A       5' hsa-miR-939-5p
           UGGG GG   CGGAGUCG GGGGU    
           AUCC CC   GCCUCGGC UCCCA    
target 5' G    G  U          C     A 3' RP11-304L19.13
Start: 326  End: 346
Energy: -36.5 kcal/mol
Align Score: 0.000937
miRNA  3' G            G AGUC          5' hsa-miR-939-5p
           UGG GGGUC UC G    GAGG GGU    
           GCC CCCGG AG C    CUCC CCG    
target 5' G   U     C  G GGAC    A   G 3' RP11-304L19.13
Start: 43  End: 63
Energy: -30.5 kcal/mol
Align Score: 0.003673
miRNA  3' G                  G   A        5' hsa-miR-939-5p
           UGGGG     GUCUCGGA UCG  GGGGU    
           GCCCC     CGGGGCCU GGC  CCCCG    
target 5' G     AGGAG        G   AG     U 3' RP11-304L19.13
Start: 268  End: 288
Energy: -42.2 kcal/mol
Align Score: 0.000107
miRNA  3 G       UCU        A       5 hsa-miR-939-5p
           UGGG GG   CGGAGUCG GGGGU    
           AUCC CC   GCCUCGGC UCCCA    
target 5 G    G  U          C     A 3 RP11-304L19.13
Start: 326  End: 346
Energy: -36.5 kcal/mol
Align Score: 0.000937
miRNA  3 G            G AGUC          5 hsa-miR-939-5p
           UGG GGGUC UC G    GAGG GGU    
           GCC CCCGG AG C    CUCC CCG    
target 5 G   U     C  G GGAC    A   G 3 RP11-304L19.13
Start: 43  End: 63
Energy: -30.5 kcal/mol
Align Score: 0.003673

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for RP11-304L19.13

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-939-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SLC34A2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 16p13.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.