Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

4q13.2

lncRNA

UBA6-AS1 ( ENSG00000248049)

miRNA

hsa-miR-760 (MIMAT0004957)

mRNA

HIST1H3D (ENSG00000197409)

Disease

ESCA

FDR

9.33E-4

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
miRNA  3'     AGGGGUGUCUGGGUCUCGGC 5' hsa-miR-760
                   |||||  ||||||| 
target 5' CCCAAGGUAACAGAA-CAGAGCCA UBA6-AS1
Start: 282  End: 289
Site type: 8mer-1a
Context++ Score: -0.462
miRNA  3'      AGGGGUGUCUGGGUCUCGGC 5' hsa-miR-760
                   |||     ||||||| 
target 5' GGAUGAAAUCACUUA--CAGAGCCA UBA6-AS1
Start: 377  End: 384
Site type: 8mer-1a
Context++ Score: -0.493
miRNA  3'      AGGGGUGUCUGGGUCUCGGC 5' hsa-miR-760
                   |||     ||||||| 
target 5' GGAUGAAAUCACUUA--CAGAGCCA UBA6-AS1
Start: 381  End: 388
Site type: 8mer-1a
Context++ Score: -0.405
RNAbybrid target site prediction
miRNA  3 A               UG         C 5 hsa-miR-760
           GGG       GUGUC  GGUC UCGG    
           CCC       CACAG  CCAG AGCC    
target 5 G   ACGACAG     UG    C    C 3 UBA6-AS1
Start: 125  End: 145
Energy: -32.2 kcal/mol
Align Score: 0.005962
miRNA  3 A   G          GG       C 5 hsa-miR-760
           GGG      UGUCU  GUCUCGG    
           CCC      ACAGA  CAGAGCC    
target 5 G   AAGGUA     A        A 3 UBA6-AS1
Start: 266  End: 286
Energy: -30.7 kcal/mol
Align Score: 0.006691

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for UBA6-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-760

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for HIST1H3D

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 4q13.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.