Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

9q34.3

lncRNA

PPP1R26-AS1 ( ENSG00000225361)

miRNA

hsa-miR-939-5p (MIMAT0004982)

mRNA

SLC34A2 (ENSG00000157765)

Disease

ESCA

FDR

1.38E-3

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
miRNA  3' gugGGGGUCU-CGGAGUCGAGGGGu 5' hsa-miR-939-5p
             :|||||| ||  ||||||||| 
target 5' acaTCCCAGAGGCGCCAGCTCCCCt 3' PPP1R26-AS1
Start: 2413  End: 2437
Energy: -39.4 kcal/mol
Align Score: 176
miRNA  3' guGGGGGUCUC-GGAGUCGAGGGGu 5' hsa-miR-939-5p
            || || ||| ||| |||||||: 
target 5' tcCCGCCTGAGCCCTGAGCTCCCTg 3' PPP1R26-AS1
Start: 2139  End: 2163
Energy: -35.69 kcal/mol
Align Score: 161
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3'        G                              5' hsa-miR-939-5p
           GUGGGG UCUCGG   AGUC        GAGGGGU    
           CACCCC GGGGCC   UCAG        CUUUCCA    
target 5' C      A      GGC    AGGGUUCA       G 3' PPP1R26-AS1
Start: 356  End: 376
Energy: -36.1 kcal/mol
Align Score: 0.001383
miRNA  3'   UG G     C              GGU 5' hsa-miR-939-5p
           G  G   GGU UCGGAG  UCGAGG      
           C  U   CCA AGCCUC  GGCUCU      
target 5' G UG AGA   C      CG      G   3' PPP1R26-AS1
Start: 358  End: 378
Energy: -30.3 kcal/mol
Align Score: 0.006907
miRNA  3' GU          G    UC         5' hsa-miR-939-5p
            GGGGG UCUC  GAG  GAGGGGU    
            CCCCC AGGG  CUC  CUCCCCG    
target 5'  U     A    AG   CC       A 3' PPP1R26-AS1
Start: 148  End: 168
Energy: -36.7 kcal/mol
Align Score: 0.0006
miRNA  3        G                              5 hsa-miR-939-5p
           GUGGGG UCUCGG   AGUC        GAGGGGU    
           CACCCC GGGGCC   UCAG        CUUUCCA    
target 5 C      A      GGC    AGGGUUCA       G 3 PPP1R26-AS1
Start: 356  End: 376
Energy: -36.1 kcal/mol
Align Score: 0.001383
miRNA  3   UG G     C              GGU 5 hsa-miR-939-5p
           G  G   GGU UCGGAG  UCGAGG      
           C  U   CCA AGCCUC  GGCUCU      
target 5 G UG AGA   C      CG      G   3 PPP1R26-AS1
Start: 358  End: 378
Energy: -30.3 kcal/mol
Align Score: 0.006907

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for PPP1R26-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-939-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SLC34A2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 9q34.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.