Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

1p13.3

lncRNA

LAMTOR5-AS1 ( ENSG00000224699)

miRNA

hsa-miR-939-5p (MIMAT0004982)

mRNA

SLC34A2 (ENSG00000157765)

Disease

ESCA

FDR

7.83E-5

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
miRNA  3' GUGGGGGUCUCGGAGUCGAGGGGU 5' hsa-miR-939-5p
                    ||||| ||||||| 
target 5'  CCAAUCGUUGCCUCUGCUCCCCA LAMTOR5-AS1
Start: 305  End: 312
Site type: 8mer-1a
Context++ Score: -0.447
RNAbybrid target site prediction
miRNA  3 GU     UCU        A       5 hsa-miR-939-5p
            GGGGG   CGGAGUCG GGGGU    
            CCUCC   GCUUCGGC UCCCA    
target 5  U     U          C     A 3 LAMTOR5-AS1
Start: 620  End: 640
Energy: -35.3 kcal/mol
Align Score: 0.002608
miRNA  3                                  G           5 hsa-miR-939-5p
           GUGGGGG       UCUCGG           A UCGAGGGGU    
           CGCUUCC       AGAGCC           U GGCUCCCCG    
target 5 G       GUCGCAC      UGACGAAGGCU G         C 3 LAMTOR5-AS1
Start: 263  End: 283
Energy: -37.4 kcal/mol
Align Score: 0.001191
miRNA  3      GG   U        AG   U 5 hsa-miR-939-5p
           GUGG  GUC CGGAGUCG  GGG    
           CACC  CAG GCCUCAGU  CUU    
target 5 C    A             CA   G 3 LAMTOR5-AS1
Start: 46  End: 66
Energy: -30.6 kcal/mol
Align Score: 0.007224
miRNA  3                                  G           5 hsa-miR-939-5p
           GUGGGGG       UCUCGG           A UCGAGGGGU    
           CGCUUCC       AGAGCC           U GGCUCCCCG    
target 5 G       GUCGCAC      UGACGAAGGCU G         C 3 LAMTOR5-AS1
Start: 4  End: 24
Energy: -37.4 kcal/mol
Align Score: 0.000825
miRNA  3 GU     UCU        A       5 hsa-miR-939-5p
            GGGGG   CGGAGUCG GGGGU    
            CCUCC   GCUUCGGC UCCCA    
target 5  U     U          C     A 3 LAMTOR5-AS1
Start: 583  End: 603
Energy: -35.3 kcal/mol
Align Score: 0.002263

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LAMTOR5-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-939-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SLC34A2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 1p13.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.